View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11118_low_3 (Length: 370)
Name: NF11118_low_3
Description: NF11118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11118_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 108 - 345
Target Start/End: Complemental strand, 8206549 - 8206311
Alignment:
| Q |
108 |
ctcataagcacatcaccaagtctttaaaaatggaaaattgtttagccaccggatattttaacaggctaacaaaattattaaaaggctatagcaacattat |
207 |
Q |
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| T |
8206549 |
ctcataagcacatcatcaagtctttaaaaatggaaaattgtttagccaccggatattttaacaggctaacaaaattattaaaaggctatagcaacattat |
8206450 |
T |
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| Q |
208 |
aacattattttatttcttttactaagatatacaa-ttttattattccacgtgaaacacatgaccaacatgttatattaatctgtagtaattgcgacnnnn |
306 |
Q |
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| T |
8206449 |
aacattattttatttcttttactaagatatacaatttttattattccacgtgaaacacatgaccaacatgttatattaatctgtagtaattgcgacaaaa |
8206350 |
T |
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| Q |
307 |
nnnttgtagttgggtgtttgttttcccacgtgagtgaaa |
345 |
Q |
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| T |
8206349 |
aaattgtagttgggtgtttgttttcccacgtgagtgaaa |
8206311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 8206646 - 8206601
Alignment:
| Q |
11 |
cagagacccaatttagaatgaacctttgttcaacgcacaccaagtc |
56 |
Q |
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|||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8206646 |
cagaaacccaatttagaatgaatctttgttcaacgcacaccaagtc |
8206601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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