View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11118_low_4 (Length: 336)
Name: NF11118_low_4
Description: NF11118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11118_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 6317619 - 6317936
Alignment:
| Q |
1 |
agcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaaccaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6317619 |
agcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaattctagcctttatctcaaaccaa |
6317718 |
T |
|
| Q |
101 |
accctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttggaggaaac |
200 |
Q |
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| T |
6317719 |
accctttcaactcttggccttgttttgtgagactctctaggagaacttatgaaaacatctcctaaaaaacaaactttaataaataattcttcgaggaaac |
6317818 |
T |
|
| Q |
201 |
ttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaa-tctggttttggtgttgttgttccaagaggaaacttgatcagtgaaatat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6317819 |
ttccaatttgatatcatgaagaactgagttgattaatgagtgaagctaaattctggttttggtgttgttgttccaagaggaaacttgatcagtgaaatat |
6317918 |
T |
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| Q |
300 |
ggtcatatgatttatgta |
317 |
Q |
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|||||||||||||||||| |
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| T |
6317919 |
ggtcatatgatttatgta |
6317936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 6297874 - 6297997
Alignment:
| Q |
1 |
agcccaggaaactaaatcagattcaataaaaggtttaactttcttgatcaaaagaggcttgagcctgttttcttcaactctagcctttatctcaaaccaa |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | || ||||||| ||| ||| ||||||||| |
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| T |
6297874 |
agcccaggaaactgaatcagattcaataaaaggtttaactttcttgatcgaaagaggcttgagtctgctgtcctcaactcgggccattacctcaaaccag |
6297973 |
T |
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| Q |
101 |
accctttcaactcttggccttgtt |
124 |
Q |
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||||||||||| |||||||||||| |
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| T |
6297974 |
accctttcaacacttggccttgtt |
6297997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 270
Target Start/End: Original strand, 6299943 - 6299993
Alignment:
| Q |
220 |
agaactgagttgattaatgagtgaagctaaatctggttttggtgttgttgt |
270 |
Q |
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| T |
6299943 |
agaactgagttgatcaacaagagaagctaaatctggttttggtgttgttgt |
6299993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 156
Target Start/End: Complemental strand, 33186418 - 33186384
Alignment:
| Q |
122 |
gttttgtgagactctctaggagaacttatgaaaac |
156 |
Q |
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| T |
33186418 |
gttttgtgagactgtctaggagaacttatgaaaac |
33186384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 157
Target Start/End: Complemental strand, 34034210 - 34034175
Alignment:
| Q |
122 |
gttttgtgagactctctaggagaacttatgaaaaca |
157 |
Q |
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||||||||||||||| |||||||||||||||||||| |
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| T |
34034210 |
gttttgtgagactctttaggagaacttatgaaaaca |
34034175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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