View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11118_low_5 (Length: 303)

Name: NF11118_low_5
Description: NF11118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11118_low_5
NF11118_low_5
[»] chr2 (2 HSPs)
chr2 (21-284)||(30934602-30934865)
chr2 (204-284)||(40070659-40070740)
[»] chr1 (3 HSPs)
chr1 (20-213)||(22590207-22590401)
chr1 (238-284)||(22590390-22590436)
chr1 (203-246)||(19722163-19722206)
[»] chr8 (2 HSPs)
chr8 (202-282)||(28952159-28952240)
chr8 (201-246)||(15739809-15739854)
[»] chr5 (5 HSPs)
chr5 (215-282)||(22129032-22129099)
chr5 (217-284)||(23737569-23737636)
chr5 (215-282)||(5023608-5023675)
chr5 (204-262)||(19906393-19906451)
chr5 (215-246)||(34369780-34369811)
[»] chr4 (2 HSPs)
chr4 (215-281)||(7622208-7622274)
chr4 (204-284)||(34742426-34742506)
[»] scaffold0179 (2 HSPs)
scaffold0179 (208-277)||(11246-11315)
scaffold0179 (208-275)||(23800-23867)
[»] chr7 (1 HSPs)
chr7 (215-284)||(22691023-22691092)
[»] chr6 (1 HSPs)
chr6 (223-283)||(19830980-19831040)
[»] scaffold0029 (1 HSPs)
scaffold0029 (201-246)||(60481-60526)
[»] chr3 (1 HSPs)
chr3 (204-284)||(21530237-21530317)
[»] scaffold0014 (1 HSPs)
scaffold0014 (201-243)||(17949-17991)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 30934865 - 30934602
Alignment:
Q  21 gagaagcgtacgatgctgttgttttggagagagaatgtgtgataacaattggtgtaaaagaagagataaaagaatgtgtggtgttttgttnnnnnnntaa 120  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||    
T  30934865 gagaagtgtacgatgctgttgttttggagagagaatgtgtgataacaattggtgtaaaagaagagataaaagaatgtgtggtgttttgttaaaaaaataa 30934766  T
Q  121 aataaaggggaaataataagccaggggctgcttgcaatttccga-gggcacacccctgtttttgctaaaagcgttccatttcaatttgccaggggtttcc 219  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30934765 aataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaaagcgttccatttcaatttgcca-gggtttcc 30934667  T
Q  220 ctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    || ||||| ||||||| |||||||| | |  |||||||||||| |||||||||||||||||||||    
T  30934666 ctcgcataactcctggtaaatttgctaggagttcttgctcctggcattattccctggcaatatgc 30934602  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 40070659 - 40070740
Alignment:
Q  204 tttgccaggggtttccc-tggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    ||||||||| ||||||| || ||||||| ||| | ||||| ||| |  |||||||||||| |||||||||||||| ||||||    
T  40070659 tttgccaggagtttcccctgacatagcttctgccgaattttccaggagttcttgctcctggcattattccctggccatatgc 40070740  T

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Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 22590207 - 22590401
Alignment:
Q  20 agagaagcgtacgatgctgttgttttggagagagaatgtgtgataacaattggtgtaaaagaagagataaaagaatgtgtggtgttttgttnnnnnnnta 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  22590207 agagaagcgtacgatgctgttgttttggagagagaatgtgtgataacaattggtgtaaaagaagagataaaagaatgtgtggtgttttgttaaaaaaata 22590306  T
Q  120 aaataaaggggaaataataagccaggggctgcttgcaatttccga-gggcacacccctgtttttgctaaaagcgttccatttcaatttgccaggg 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22590307 aaataaaggggaaataataagccaggggctgcttgcaatttgcgaggggcacacccctgtttttgctaaaagcgttccatttcaatttgccaggg 22590401  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 22590390 - 22590436
Alignment:
Q  238 aatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  22590390 aatttgccagggattcttgctcctggcattatttcctggcaatatgc 22590436  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 246
Target Start/End: Original strand, 19722163 - 19722206
Alignment:
Q  203 atttgccaggggtttccctggcatagctcctggcaaatttgcca 246  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||    
T  19722163 atttgccaggggtttccctggcattactcctggtaaatttgcca 19722206  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 28952240 - 28952159
Alignment:
Q  202 aatttgccaggggttt-ccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatat 282  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  28952240 aatttgccaggagttttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatat 28952159  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 246
Target Start/End: Complemental strand, 15739854 - 15739809
Alignment:
Q  201 caatttgccaggggtttccctggcatagctcctggcaaatttgcca 246  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  15739854 caatttgccaggggtttccctggcattactcctggcaaatttgcca 15739809  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 22129032 - 22129099
Alignment:
Q  215 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatat 282  Q
    |||||||||||| ||||||||||||||||||| |  |||||||||||| |||||||||||||||||||    
T  22129032 tttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatat 22129099  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 23737636 - 23737569
Alignment:
Q  217 tccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    |||||||||| ||||||||||||||||||| |  |||||||||||| |||| ||||||||||||||||    
T  23737636 tccctggcattgctcctggcaaatttgccaggagttcttgctcctggcattgttccctggcaatatgc 23737569  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 282
Target Start/End: Original strand, 5023608 - 5023675
Alignment:
Q  215 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatat 282  Q
    |||||||||||| ||||||||||||||| ||| |  ||||||||| || |||||||||||| ||||||    
T  5023608 tttccctggcatggctcctggcaaattttccaggagttcttgctcttggcattattccctgacaatat 5023675  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 262
Target Start/End: Complemental strand, 19906451 - 19906393
Alignment:
Q  204 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctg 262  Q
    |||||||||||  |||||||||| ||||||||||||||||||| |  ||||||||||||    
T  19906451 tttgccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctg 19906393  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 34369811 - 34369780
Alignment:
Q  215 tttccctggcatagctcctggcaaatttgcca 246  Q
    ||||||||||||||||||||||||||||||||    
T  34369811 tttccctggcatagctcctggcaaatttgcca 34369780  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 281
Target Start/End: Complemental strand, 7622274 - 7622208
Alignment:
Q  215 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaata 281  Q
    |||||||||||||||||||||||||||||||| |  || ||||||||| |||| |||||||||||||    
T  7622274 tttccctggcatagctcctggcaaatttgccaggagtttttgctcctggcatttttccctggcaata 7622208  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 34742506 - 34742426
Alignment:
Q  204 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    |||||||||||||||| ||||||||  |||||||||||||||| || ||  |||||||| ||| ||| |||||||| ||||    
T  34742506 tttgccaggggtttccttggcatagtccctggcaaatttgccaggggttgatgctcctggcataatttcctggcaaaatgc 34742426  T

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Target: scaffold0179 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 11315 - 11246
Alignment:
Q  208 ccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggc 277  Q
    |||||||  |||||||||| |||||||||||||||||||||  |||||||||||| |||  |||||||||    
T  11315 ccaggggcatccctggcattgctcctggcaaatttgccaagagttcttgctcctggcatagttccctggc 11246  T

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Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 23800 - 23867
Alignment:
Q  208 ccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctg 275  Q
    |||||||  |||||||||| ||||||||||||||||||| |  |||||||||||| |||  |||||||    
T  23800 ccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcatagttccctg 23867  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 22691023 - 22691092
Alignment:
Q  215 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    |||| |||||||||||||||| ||||||| ||    |||||||||||| |||||||||||||||||||||    
T  22691023 tttctctggcatagctcctggaaaatttgacagcagttcttgctcctggcattattccctggcaatatgc 22691092  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 283
Target Start/End: Original strand, 19830980 - 19831040
Alignment:
Q  223 gcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatg 283  Q
    |||||||||||||||||||| ||| |  |||||||||||| |||| |||||||||||||||    
T  19830980 gcatagctcctggcaaattttccaggagttcttgctcctggcattgttccctggcaatatg 19831040  T

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Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 60481 - 60526
Alignment:
Q  201 caatttgccaggggtttccctggcatagctcctggcaaatttgcca 246  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  60481 caatttgccaggggtttccctggcattactcctagcaaatttgcca 60526  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 21530317 - 21530237
Alignment:
Q  204 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgc 284  Q
    |||||||||||||||| ||||||||  |||||||||||||||| |  ||  |||||||| ||| ||| |||||||| ||||    
T  21530317 tttgccaggggtttccttggcatagtccctggcaaatttgccaggagttgatgctcctggcataatttcctggcaaaatgc 21530237  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 17991 - 17949
Alignment:
Q  201 caatttgccaggggtttccctggcatagctcctggcaaatttg 243  Q
    ||||||| ||||||||||||||||||  |||||||||||||||    
T  17991 caatttgtcaggggtttccctggcattactcctggcaaatttg 17949  T

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