View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_high_10 (Length: 366)
Name: NF11119_high_10
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 52851978 - 52851629
Alignment:
| Q |
1 |
tctctattcatcatccttctctctttcgttgctctagctcaatgctttactggatcggatgttctccgatggagatctttctatgaatcccacgacaatg |
100 |
Q |
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| T |
52851978 |
tctctattcatcatccttctctctttcgttgctctagctcaatgctttactggatccgatgttctccgatggagatctttctatgaatcccacgacaatg |
52851879 |
T |
|
| Q |
101 |
cttggaaatcccattacagggaagtttttgataacggcttacgcgagaccttgtgctgtctcggccgcgtcaaatacttgactgcaatccaacaagaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52851878 |
cttggaaatcccattacagggaagtttttgataacggcttacgcgagaccttgtgctgtctcggccgcgtcaaatacttgactgcaatccaacaagaaga |
52851779 |
T |
|
| Q |
201 |
agatgaagtctattccgttgcacgcttattaggcgatcttgttgcttatcgtgcttctggaactggccatatggaactcttggcaggtttcttcaaattt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52851778 |
agatgaagtctattccgttgcacgcttattaggcgatcttgttgcttatcgtgcttctggaactggccatatggaactcttggcaggtttcttcaaattt |
52851679 |
T |
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| Q |
301 |
cactctctcaatccacatatggatcacattgcattttaccatcacaatgc |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52851678 |
cactctctcaatccacatatggatcacattgcattttaccatcacaatgc |
52851629 |
T |
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