View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11119_high_13 (Length: 262)

Name: NF11119_high_13
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11119_high_13
NF11119_high_13
[»] chr3 (8 HSPs)
chr3 (104-246)||(44792917-44793058)
chr3 (155-246)||(44797855-44797946)
chr3 (155-237)||(44801250-44801332)
chr3 (149-244)||(44789413-44789509)
chr3 (18-72)||(3792424-3792478)
chr3 (18-72)||(3830604-3830658)
chr3 (155-246)||(44805742-44805833)
chr3 (154-196)||(44784308-44784350)
[»] chr5 (1 HSPs)
chr5 (18-106)||(11888100-11888188)
[»] scaffold0141 (1 HSPs)
scaffold0141 (18-106)||(16453-16541)
[»] chr7 (1 HSPs)
chr7 (18-106)||(8425109-8425197)
[»] chr1 (1 HSPs)
chr1 (18-106)||(52242804-52242892)
[»] chr4 (2 HSPs)
chr4 (18-76)||(7362055-7362113)
chr4 (18-95)||(48229494-48229571)
[»] scaffold0267 (1 HSPs)
scaffold0267 (18-72)||(7366-7420)
[»] chr2 (1 HSPs)
chr2 (18-70)||(13698224-13698276)


Alignment Details
Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 104 - 246
Target Start/End: Original strand, 44792917 - 44793058
Alignment:
Q  104 attagttaatattggtctaaaaacaaaaagaagatgatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgacc 203  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44792917 attagttaatattggta-aaaaacaaaaagaagatgatgaatagtgtaggatacgaacgagtaaacgtggaggtatgttcattgagaagacgacacgacc 44793015  T
Q  204 aggttcaatgcgatccaatcgtaggccgcgcaaggttagatgt 246  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  44793016 aggttcaatgcgatccaatcgtaggccgcgcaaggttagatgt 44793058  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 44797855 - 44797946
Alignment:
Q  155 tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgt 246  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||| ||| |||||||| ||||||||    
T  44797855 tacgaacgagtaaacgtgggggtatgttcattgagaagacgacacgaccaggttcaatgagatccaatcgcagggcgcgcaagattagatgt 44797946  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 44801250 - 44801332
Alignment:
Q  155 tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaag 237  Q
    ||||||||||||||||||||||||||||||||||||| || ||| | ||||| |||||| |||||||||||||||| ||||||    
T  44801250 tacgaacgagtaaacgtggaggtatgttcattgagaaaacgacatggccaggctcaatgagatccaatcgtaggccacgcaag 44801332  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 44789413 - 44789509
Alignment:
Q  149 gtaggatacgaacgagtaaacgtggaggtatgttcatt-gagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagat 244  Q
    ||||||||||||||||||||||||  |||||| ||||| |||||||  ||||||||||| | |||| |||||||||||||||| |||||| ||||||    
T  44789413 gtaggatacgaacgagtaaacgtgagggtatgctcatttgagaagaggacacgaccaggcttaatgagatccaatcgtaggccacgcaagattagat 44789509  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3792424 - 3792478
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaac 72  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  3792424 caaactaaagcaaaacaaacataagcatatcagaattctagcctataacagcaac 3792478  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 3830604 - 3830658
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaac 72  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||    
T  3830604 caaactaaagcaaaacaaacaaaagcatataagaattctagcctataacagcaac 3830658  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 246
Target Start/End: Original strand, 44805742 - 44805833
Alignment:
Q  155 tacgaacgagtaaacgtggaggtatgttcattgagaagacaacacgaccaggttcaatgcgatccaatcgtaggccgcgcaaggttagatgt 246  Q
    ||||||||||||||||||| ||||||||||||| ||| |  ||||| ||||| ||||||  ||| || |||||||| |||||| ||||||||    
T  44805742 tacgaacgagtaaacgtgggggtatgttcattgtgaaaatgacacggccaggctcaatgacatcgaagcgtaggccacgcaagattagatgt 44805833  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 196
Target Start/End: Original strand, 44784308 - 44784350
Alignment:
Q  154 atacgaacgagtaaacgtggaggtatgttcattgagaagacaa 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  44784308 atacgaacgagtaaacgtggaggtatcttcattgagaagacaa 44784350  T

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Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 11888100 - 11888188
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactattataagctttggatatacttctacaaatatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||    
T  11888100 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagaaacttttataagcttcggatgtacttctacaaatatt 11888188  T

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Target: scaffold0141 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 16453 - 16541
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactattataagctttggatatacttctacaaatatt 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||    
T  16453 caaactaaggcaaaacaaacagaagcatattagaattctagcctataacaaaaacttttataagctttggatgtacttctacaaatatt 16541  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 8425197 - 8425109
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactattataagctttggatatacttctacaaatatt 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||  |||| ||||||||||||||| ||||||||||||||||    
T  8425197 caaactaaggcaaaacaaacagaagcatattagaattctagcctataacaaaaacttttataagctttggatgtacttctacaaatatt 8425109  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 52242804 - 52242892
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactattataagctttggatatacttctacaaatatt 106  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||| ||||||| ||||||||||||||||    
T  52242804 caaactaaggcaaaacaaacagaagcatattagaattctagtctataacagaaacttttataagttttggatgtacttctacaaatatt 52242892  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7362055 - 7362113
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactatt 76  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7362055 caaactaaggcaaaacaaacataagcatattagaattctagcctacaacagcaactatt 7362113  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 48229571 - 48229494
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaactattataagctttggatatactt 95  Q
    |||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||    
T  48229571 caaactaaggcaaaacaagcagaagcaaattagaattctagcctataacagtaactatcaaaagctttggatatactt 48229494  T

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Target: scaffold0267 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 7366 - 7420
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagcaac 72  Q
    |||||||| |||||||||||| |||||||| ||||||||||||||||||| ||||    
T  7366 caaactaaagcaaaacaaacaaaagcatataagaattctagcctataacaacaac 7420  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 13698276 - 13698224
Alignment:
Q  18 caaactaaggcaaaacaaacataagcatattagaattctagcctataacagca 70  Q
    |||||||| |||||||||||| |||||||| | ||||||||||||||| ||||    
T  13698276 caaactaaagcaaaacaaacaaaagcatatcaaaattctagcctataagagca 13698224  T

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