View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_high_15 (Length: 259)
Name: NF11119_high_15
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 36075318 - 36075087
Alignment:
| Q |
19 |
agatgtttcatcttttgagacactcagatttaaatttctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075318 |
agatgtttcatcttttgagacactcagatttaaatttctctctacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
36075219 |
T |
|
| Q |
119 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36075218 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
36075119 |
T |
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| Q |
219 |
caacactgcattttcctccccctttgcttctc |
250 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
36075118 |
caacactgcattttcctcccccttttcttctc |
36075087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 42169295 - 42169064
Alignment:
| Q |
19 |
agatgtttcatcttttgagacactcagatttaaatttctctcgacttattcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
118 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42169295 |
agatgtttcatcttttgagacactcagatttaaatttctctctacttcttcaattattttgttcttattgaagcatcatcatcaatccactaaccaacaa |
42169196 |
T |
|
| Q |
119 |
catgaatccagaaggatgaatgtaacaaattcagataattattttgtcactttatctctctacaaccaaagtaaccagtacctctttctctctctaaaat |
218 |
Q |
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|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
42169195 |
catgaatccagaaagatgaatgtaacaaattcagataattattttgtcactttatctctatacaaccaaagtaaccagtaccgctttctctctctaaaat |
42169096 |
T |
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| Q |
219 |
caacactgcattttcctccccctttgcttctc |
250 |
Q |
| |
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|||||||||||||||||||| |||| |||||| |
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| T |
42169095 |
caacactgcattttcctccctcttttcttctc |
42169064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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