View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_high_18 (Length: 249)
Name: NF11119_high_18
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_high_18 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 13680473 - 13680237
Alignment:
| Q |
14 |
gaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaacnnnnnnnnnctagatgaattgttcccgactcgaaaattagtct |
113 |
Q |
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| T |
13680473 |
gaacagtgtgtttgattcctagagtcgcccatttgagaggtagccaaaccctctaacaaaaaaaaactagatgaattgctcccgattcgaaaattagtct |
13680374 |
T |
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| Q |
114 |
catagcagacccaaagtgccaaagcc-acggtgataccttgggatgtctattgtggtcaaagatactaattacggtaggtaaaatacgaaacaatcactg |
212 |
Q |
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| T |
13680373 |
catagcagacccaaagtgccaaagcccacagtgataccttgggatatctattgtggtcaaagatactaattacggtaggtaaaatacgaaaaaatctctg |
13680274 |
T |
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| Q |
213 |
gttagaactcaggtttggacatgaagcgacattaact |
249 |
Q |
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| T |
13680273 |
gttaaaactcgggtttggacatgaagcgacattaact |
13680237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 249
Target Start/End: Complemental strand, 13417911 - 13417674
Alignment:
| Q |
14 |
gaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaacnnnnnnnnn--ctagatgaattgttcccgactcgaaaattagt |
111 |
Q |
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| T |
13417911 |
gaacagtgtgtttgattcctagaatcgcccatttgagaggtagccaaaccctctaacaaagaaaaaaactagatgaattgttcccgactcgaaaattagt |
13417812 |
T |
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| Q |
112 |
ctcatagcagacccaaagtgccaaagccacggtgataccttgggatgtctattgtggtcaaagatactaattacggtaggtaaaatacgaaacaatcact |
211 |
Q |
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| T |
13417811 |
ctcatagcatacccaaagtgccaaagccacggtgataccttgggatatctattgtggtcaaagatactaattacggtaggtaaaataagaaaaaatctcg |
13417712 |
T |
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| Q |
212 |
ggttagaactcaggtttggacatgaagcgacattaact |
249 |
Q |
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| T |
13417711 |
ggttagaactcgggtttggacgtgaagcgacattaact |
13417674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 48248 - 48134
Alignment:
| Q |
14 |
gaacagtgtgtttgattcctagagtcgcccatttgagaggtagcaaaaccctctaacnnnnnnnnnctagatgaattgttcccgactcgaaaattagtct |
113 |
Q |
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| T |
48248 |
gaactgtgtgtttgattcctagagtcgcccatttgagaggtagccaaaccctctaac-aaaaaaaactagatgaattgttgccaactcaaaaattagttt |
48150 |
T |
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| Q |
114 |
catagcagacccaaag |
129 |
Q |
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| T |
48149 |
catagcagacccaaag |
48134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 48134 - 48039
Alignment:
| Q |
153 |
gggatgtctattgtggtcaaagatactaattacggtaggtaaaatacgaaacaatcactggttagaactcaggtttggacatgaagcgacattaact |
249 |
Q |
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| T |
48134 |
gggatatctattg-ggtcaaagatactaattacggtaggttacataaggaaaagtctcaggttcgaactcgggtttggacatgcagcggcattaact |
48039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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