View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_high_20 (Length: 234)
Name: NF11119_high_20
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 52478367 - 52478151
Alignment:
| Q |
1 |
aaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataattaacttatacaaataaaaa |
100 |
Q |
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| T |
52478367 |
aaattgaaccgtgggtaacatctctaataaagccatgatgacttgagaaccgacaatattaaaaaagatcaccgttataatttacttatacaaataataa |
52478268 |
T |
|
| Q |
101 |
acggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactcatgaccatg |
200 |
Q |
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| T |
52478267 |
a-ggtaaagtgatggtgtaaatgtccactgagaataacaacagttctagaccagttgctaataggccgtcaacaatggcatggcgtcactcatgaccatg |
52478169 |
T |
|
| Q |
201 |
actatctaatgttaattt |
218 |
Q |
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|||||||||||||||||| |
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| T |
52478168 |
actatctaatgttaattt |
52478151 |
T |
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