View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_high_4 (Length: 483)
Name: NF11119_high_4
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 478
Target Start/End: Complemental strand, 48020932 - 48020474
Alignment:
| Q |
19 |
atgccaaccgcaaatttctcttttcttcccatctccttaacgtttgtgcaaccttgaacagctagcatcataaaatcaatgtgtttatagctcattcatc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020932 |
atgccaaccgcaaatttctcttttcttcccatctccttaacgtttgtgcaaccttgaacagctagcatcataaaatcaatgtgtttatagctcattcatc |
48020833 |
T |
|
| Q |
119 |
atatatgtaccattattactactatcatatacatgaataaaatgcaatcataacatgatagtccaagagggtctctcttagctaaaaatttaattaacct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020832 |
atatatgtaccattattactactatcatatacatgaataaaatgcaatcataacatgatagtccaagagggtctctcttagctaaaaatttaattaacct |
48020733 |
T |
|
| Q |
219 |
cacccaccatcctttcctcaccattaatacaatatttaagacaggaaaagaaagagaaatagaaagagaaggnnnnnnnaccttcctattttcttcctct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48020732 |
cacccaccatcctttcctcaccattaatacaatatttaagacaggaaaagaaagagaaatagaaagagaaggtttttttaccttcctattttcttcctct |
48020633 |
T |
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| Q |
319 |
caagaaaagtcgtttttcaatttcccctttcattgttaggtttatttgtttgggtatatggtaaaatggaaatgtccatgaaagttagatttactttgtg |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48020632 |
caagaaaagtcgtttttcaatttcccttttcattgttaggtttatttgtttgggtatatggtaaaatggaaatgtccatgaaagttagatttactttgtg |
48020533 |
T |
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| Q |
419 |
ctgattgcattactagtattggttttgtagctcctttgtttttacctatttcttctctct |
478 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
48020532 |
ctgattgcattactagtattggttttgtagctccttt-tttttacctatttcttctctct |
48020474 |
T |
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