View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11119_high_6 (Length: 437)

Name: NF11119_high_6
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11119_high_6
NF11119_high_6
[»] chr7 (2 HSPs)
chr7 (1-429)||(26281808-26282240)
chr7 (112-339)||(24805306-24805541)
[»] chr4 (2 HSPs)
chr4 (112-342)||(1774797-1775036)
chr4 (338-420)||(1775146-1775228)
[»] chr8 (2 HSPs)
chr8 (112-339)||(16239307-16239542)
chr8 (338-420)||(16239655-16239737)
[»] chr6 (1 HSPs)
chr6 (112-339)||(1708607-1708842)
[»] chr5 (2 HSPs)
chr5 (112-339)||(15275585-15275820)
chr5 (338-420)||(15275933-15276015)
[»] chr3 (4 HSPs)
chr3 (112-339)||(18151197-18151432)
chr3 (210-339)||(12413296-12413432)
chr3 (338-420)||(18151545-18151627)
chr3 (347-420)||(12413554-12413627)


Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 26281808 - 26282240
Alignment:
Q  1 ctctcatttctaagcatccttcttagaaattattcacataatatcataagttgggacaggacaattatgagaagaaatcaaaacaaaatgaaatcatgtc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  26281808 ctctcatttctaagcatccttcttagaaattatgcacataataacataagttgggacaagacaattatgagaagaaatcaaaacaaaataaaatcatgtc 26281907  T
Q  101 caacatgaccgtaccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacc 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26281908 caacatgaccgtaccttaaacgagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacc 26282007  T
Q  201 tatgccaataaagtgcatttcat----tttcttgtaaaacattcttgaacttgaaatataacatttcatatgctacagcctgtaaaacaacattaatttg 296  Q
    ||||| ||||||||| |||||||    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26282008 tatgcgaataaagtgtatttcatttaatttcttgtaaaacattcttgaagttgaaatataacatttcatatgctacagcctgtaaaacaacattaatttg 26282107  T
Q  297 ttgatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtg 396  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26282108 tggatcttcagaaaatcgcatttgaagcacatcaacaagattttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccagtg 26282207  T
Q  397 atttgaaagttttctgaattttctgcctttgct 429  Q
    |||||||| |||| |||||||||||||| ||||    
T  26282208 atttgaaatttttttgaattttctgcctctgct 26282240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 24805541 - 24805306
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 210  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  24805541 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 24805442  T
Q  211 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 303  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  24805441 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 24805342  T
Q  304 tcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
    |||||||||||||||||||||||| |||||||||||    
T  24805341 tcagaaaatcgcatttgaagcacagcaacaagattt 24805306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 112 - 342
Target Start/End: Original strand, 1774797 - 1775036
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtaccta--tgccaat 209  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||  ||  ||     
T  1774797 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 1774896  T
Q  210 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatc 302  Q
    ||| || |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||    
T  1774897 aaaatgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacatcattaatttgtggatc 1774996  T
Q  303 ttcagaaaatcgcatttgaagcacatcaacaagattttca 342  Q
     |||||||||||||||||||||||| ||||||||||||||    
T  1774997 atcagaaaatcgcatttgaagcacaacaacaagattttca 1775036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 1775146 - 1775228
Alignment:
Q  338 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 420  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||| | |||||||||||||||    
T  1775146 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgagaattttctgaattttct 1775228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 16239307 - 16239542
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 210  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  16239307 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 16239406  T
Q  211 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 303  Q
    ||||| |||| |||| |||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||||||||||||||| ||||     
T  16239407 aagtgtattttatttacttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacaacattaatttgtggatca 16239506  T
Q  304 tcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
    |||||||||||||||||||||||| |||||||||||    
T  16239507 tcagaaaatcgcatttgaagcacaacaacaagattt 16239542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 16239655 - 16239737
Alignment:
Q  338 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 420  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  16239655 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 16239737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 339
Target Start/End: Complemental strand, 1708842 - 1708607
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 210  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  1708842 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 1708743  T
Q  211 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 303  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  1708742 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 1708643  T
Q  304 tcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
    |||||||||||||||||||||||| |||||||||||    
T  1708642 tcagaaaatcgcatttgaagcacagcaacaagattt 1708607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 15275585 - 15275820
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 210  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  15275585 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 15275684  T
Q  211 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 303  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  15275685 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 15275784  T
Q  304 tcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
    |||||||||||||||||||||||| |||||||||||    
T  15275785 tcagaaaatcgcatttgaagcacagcaacaagattt 15275820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 15275933 - 15276015
Alignment:
Q  338 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 420  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  15275933 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 15276015  T

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Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 18151197 - 18151432
Alignment:
Q  112 taccttaaaagagtagtgaatcagtgtcacttgtagtttgttgattgttaccaatagaaccatttcgagcacttgcaacatcaggtacctatg-ccaata 210  Q
    ||||||||||| | |||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |   || |    
T  18151197 taccttaaaagtgcagtgaaccagtgccacttgtagtttgttgattattaccaatagaaccatttggagcacttgcaacatcaggtacctaagtgaaaaa 18151296  T
Q  211 aagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatt-------tcatatgctacagcctgtaaaacaacattaatttgttgatct 303  Q
    ||||| |||| ||||||||| |||||||||||||| |||||| |||| |||       || |  |||||||||||||| ||| ||||||||||| ||||     
T  18151297 aagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttattacctcttgagctacagcctgtaagacagcattaatttgtggatca 18151396  T
Q  304 tcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
    |||||||||||||||||||||||| |||||||||||    
T  18151397 tcagaaaatcgcatttgaagcacagcaacaagattt 18151432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 210 - 339
Target Start/End: Original strand, 12413296 - 12413432
Alignment:
Q  210 aaagtgcatttcattttcttgtaaaacattcttgaacttgaaatataacatttcatat-------gctacagcctgtaaaacaacattaatttgttgatc 302  Q
    |||||| |||| ||||||||| |||||||||||||| |||||| |||| ||||| ||        |||||||||||||| ||| ||||||||||| ||||    
T  12413296 aaagtgtattttattttcttgaaaaacattcttgaagttgaaaaataagatttcttacctcttgagctacagcctgtaagacagcattaatttgtggatc 12413395  T
Q  303 ttcagaaaatcgcatttgaagcacatcaacaagattt 339  Q
     |||||||||||||||||||||||| |||||||||||    
T  12413396 atcagaaaatcgcatttgaagcacaacaacaagattt 12413432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 420
Target Start/End: Original strand, 18151545 - 18151627
Alignment:
Q  338 tttcagacgctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 420  Q
    |||||| | ||||||||||| |||||||||||||| ||||||| ||||||||  | |||| |||||| |||||||||||||||    
T  18151545 tttcaggccctttcacttttgagtatgtatcattcatccaatttgtagaatcttcagtgacttgaaaattttctgaattttct 18151627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 12413554 - 12413627
Alignment:
Q  347 ctttcacttttcagtatgtatcattcttccaattcgtagaatcaccggtgatttgaaagttttctgaattttct 420  Q
    ||||||||||| |||||||||||||| ||||||| ||||||||  | ||||  ||||| |||||||||||||||    
T  12413554 ctttcacttttgagtatgtatcattcgtccaatttgtagaatcttcagtgacgtgaaaattttctgaattttct 12413627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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