View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11119_low_12 (Length: 370)

Name: NF11119_low_12
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11119_low_12
NF11119_low_12
[»] chr1 (11 HSPs)
chr1 (109-219)||(13417180-13417290)
chr1 (156-219)||(13679995-13680058)
chr1 (297-354)||(13679859-13679916)
chr1 (297-354)||(13417044-13417101)
chr1 (14-54)||(13417345-13417385)
chr1 (12-51)||(15904181-15904220)
chr1 (170-214)||(13535022-13535068)
chr1 (109-142)||(13538126-13538159)
chr1 (109-142)||(19066161-19066194)
chr1 (109-142)||(19114051-19114084)
chr1 (170-215)||(20472139-20472186)
[»] scaffold0006 (4 HSPs)
scaffold0006 (151-216)||(47441-47506)
scaffold0006 (109-153)||(47541-47585)
scaffold0006 (14-54)||(47692-47732)
scaffold0006 (109-142)||(94852-94885)
[»] scaffold0069 (1 HSPs)
scaffold0069 (109-142)||(20601-20634)


Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 109 - 219
Target Start/End: Complemental strand, 13417290 - 13417180
Alignment:
Q  109 tatatgagataactttccatcactatttctgagtacctctaaccaatctcttcatagtgtggtacaaattaaagatgcagaaaatatgagataactttcc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13417290 tatatgagataactttccatcactatttctgagtacctctaaccaatctcttcatagtgtggtacaaattaaagatgcagaaaatatgagataactttcc 13417191  T
Q  209 atcacttccaa 219  Q
    |||||||||||    
T  13417190 atcacttccaa 13417180  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 13680058 - 13679995
Alignment:
Q  156 ctcttcatagtgtggtacaaattaaagatgcagaaaatatgagataactttccatcacttccaa 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13680058 ctcttaatagtgtggtacaaattaaagatgcagaaaatatgagataactttccatcacttccaa 13679995  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 13679916 - 13679859
Alignment:
Q  297 cgtcagatctcttagtataattaaagagacaaattaatagtggagcaaagtcactttt 354  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13679916 cgtcaaatctcttagtataattaaagagacaaattaatagtggggcagagtcactttt 13679859  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 13417101 - 13417044
Alignment:
Q  297 cgtcagatctcttagtataattaaagagacaaattaatagtggagcaaagtcactttt 354  Q
    ||||| |||||||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  13417101 cgtcaaatctcttagtataattaaagaggcaaattaatagtggggcagagtcactttt 13417044  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 13417385 - 13417345
Alignment:
Q  14 gaacagaatatatgagataacctttgaaactgaatgatctg 54  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  13417385 gaacagaatataggagataacctttgaaactgaatgatctg 13417345  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 15904181 - 15904220
Alignment:
Q  12 atgaacagaatatatgagataacctttgaaactgaatgat 51  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  15904181 atgaacagaatatatgagataacctttaaaactgaatgat 15904220  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 214
Target Start/End: Complemental strand, 13535068 - 13535022
Alignment:
Q  170 gtacaaattaaagatgcagaaaatat--gagataactttccatcact 214  Q
    |||||||||||| |||||||||||||  |||||||||||||||||||    
T  13535068 gtacaaattaaaaatgcagaaaatatatgagataactttccatcact 13535022  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 13538159 - 13538126
Alignment:
Q  109 tatatgagataactttccatcactatttctgagt 142  Q
    |||||||||||||||||||||||||||| |||||    
T  13538159 tatatgagataactttccatcactatttttgagt 13538126  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 19066161 - 19066194
Alignment:
Q  109 tatatgagataactttccatcactatttctgagt 142  Q
    |||||||||||||||||||||||||||| |||||    
T  19066161 tatatgagataactttccatcactatttttgagt 19066194  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Original strand, 19114051 - 19114084
Alignment:
Q  109 tatatgagataactttccatcactatttctgagt 142  Q
    |||||||||||||||||||||||||||| |||||    
T  19114051 tatatgagataactttccatcactatttttgagt 19114084  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 20472186 - 20472139
Alignment:
Q  170 gtacaaattaaagatgcagaaa--atatgagataactttccatcactt 215  Q
    |||||||||||| |||||||||  |||||| |||||||||||||||||    
T  20472186 gtacaaattaaaaatgcagaaaatatatgatataactttccatcactt 20472139  T

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Target: scaffold0006 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 47506 - 47441
Alignment:
Q  151 ccaatctcttcatagtgtggtacaaattaaagatgcagaaaatatgagataactttccatcacttc 216  Q
    |||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  47506 ccaatcacttcatagtgcggtacaaattaaagatgcagaaaataagagataactttccatcacttc 47441  T

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Target: scaffold0006; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 47585 - 47541
Alignment:
Q  109 tatatgagataactttccatcactatttctgagtacctctaacca 153  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  47585 tatatgagataactttccatcactatttttgagtacctctaacca 47541  T

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Target: scaffold0006; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 47732 - 47692
Alignment:
Q  14 gaacagaatatatgagataacctttgaaactgaatgatctg 54  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47732 gaacagaatatatgagataacctttgaaactgaatgatctg 47692  T

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Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 94885 - 94852
Alignment:
Q  109 tatatgagataactttccatcactatttctgagt 142  Q
    |||||||||||||||||||||||||||| |||||    
T  94885 tatatgagataactttccatcactatttttgagt 94852  T

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Target: scaffold0069 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 142
Target Start/End: Complemental strand, 20634 - 20601
Alignment:
Q  109 tatatgagataactttccatcactatttctgagt 142  Q
    |||||||||||||||||||||||||||| |||||    
T  20634 tatatgagataactttccatcactatttttgagt 20601  T

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