View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_low_19 (Length: 258)
Name: NF11119_low_19
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_low_19 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 52852142 - 52852263
Alignment:
| Q |
137 |
gtaatgaagtggactcaccaacctaaaatacaagcagttggtgtggtgttatctttggataaatagtaaacagagttgaggataaggtaagcagcacaca |
236 |
Q |
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| T |
52852142 |
gtaatgaagtggactcaccaacctaaaatacaagcagttggtgtggtgttatctttggataaatagtaaacagagttgaggataaggtaagcagcacaca |
52852241 |
T |
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| Q |
237 |
caaattgaataacagtgagggc |
258 |
Q |
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| T |
52852242 |
caaattgaataatagtgagggc |
52852263 |
T |
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Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 52851961 - 52852064
Alignment:
| Q |
1 |
aaggatgatgaatagagagagtagcttgtggttccaccagtgagggttccatcctaattctgcaacatatatagcattgggtatggtaaggtgagttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52851961 |
aaggatgatgaatagagagagtagcttgtggttccaccagtgagggttccatcctaattctgcaacatatatagcatt-ggtatggtaaggtgagttgaa |
52852059 |
T |
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| Q |
101 |
ttgag |
105 |
Q |
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||||| |
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| T |
52852060 |
ttgag |
52852064 |
T |
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