View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11119_low_2 (Length: 574)

Name: NF11119_low_2
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11119_low_2
NF11119_low_2
[»] chr7 (29 HSPs)
chr7 (99-219)||(26565323-26565443)
chr7 (99-216)||(22687042-22687159)
chr7 (100-215)||(4574968-4575083)
chr7 (99-216)||(39182393-39182510)
chr7 (133-201)||(1977800-1977868)
chr7 (99-208)||(11325223-11325332)
chr7 (137-201)||(17741896-17741960)
chr7 (133-204)||(14055506-14055577)
chr7 (133-204)||(14365534-14365605)
chr7 (99-193)||(5058788-5058882)
chr7 (133-219)||(8343611-8343697)
chr7 (99-215)||(17811586-17811702)
chr7 (133-204)||(8329788-8329859)
chr7 (153-204)||(8329873-8329924)
chr7 (133-216)||(21846256-21846339)
chr7 (140-182)||(7307203-7307245)
chr7 (138-176)||(17809006-17809044)
chr7 (133-191)||(27221676-27221734)
chr7 (132-204)||(7730167-7730239)
chr7 (133-193)||(8304346-8304406)
chr7 (153-204)||(8346360-8346411)
chr7 (152-215)||(21157521-21157584)
chr7 (139-201)||(48621470-48621532)
chr7 (138-191)||(9685108-9685161)
chr7 (99-180)||(10285678-10285759)
chr7 (160-193)||(23618265-23618298)
chr7 (156-216)||(4247593-4247653)
chr7 (139-215)||(5715523-5715599)
chr7 (145-193)||(26340194-26340242)
[»] chr3 (30 HSPs)
chr3 (99-216)||(3449085-3449202)
chr3 (99-216)||(17064544-17064661)
chr3 (133-216)||(27676673-27676756)
chr3 (99-204)||(41671428-41671533)
chr3 (99-216)||(25870097-25870214)
chr3 (99-215)||(28746014-28746130)
chr3 (145-208)||(28136007-28136070)
chr3 (139-215)||(8592214-8592290)
chr3 (133-209)||(9152794-9152870)
chr3 (133-193)||(20766710-20766770)
chr3 (142-216)||(6136387-6136461)
chr3 (97-189)||(13006089-13006180)
chr3 (132-215)||(8560265-8560348)
chr3 (145-216)||(13286181-13286252)
chr3 (133-216)||(22137514-22137597)
chr3 (99-201)||(15515033-15515135)
chr3 (99-216)||(10872490-10872607)
chr3 (152-209)||(17796809-17796866)
chr3 (152-209)||(19105249-19105306)
chr3 (141-193)||(3041483-3041535)
chr3 (141-193)||(22971069-22971121)
chr3 (133-216)||(21963668-21963751)
chr3 (133-216)||(21986104-21986187)
chr3 (132-215)||(24620005-24620088)
chr3 (134-204)||(8155939-8156009)
chr3 (133-215)||(27090680-27090762)
chr3 (133-187)||(30727668-30727722)
chr3 (156-193)||(18014251-18014288)
chr3 (140-185)||(52519839-52519884)
chr3 (132-188)||(19348818-19348874)
[»] chr5 (15 HSPs)
chr5 (145-219)||(24648243-24648317)
chr5 (99-215)||(43005634-43005750)
chr5 (133-192)||(27339996-27340055)
chr5 (133-215)||(18843953-18844035)
chr5 (152-215)||(17624839-17624902)
chr5 (133-216)||(19377840-19377923)
chr5 (161-215)||(23172265-23172319)
chr5 (133-219)||(43235102-43235188)
chr5 (141-193)||(15051914-15051966)
chr5 (133-193)||(22645536-22645596)
chr5 (161-209)||(38158101-38158149)
chr5 (140-179)||(15446408-15446447)
chr5 (141-191)||(41427681-41427731)
chr5 (132-173)||(29270303-29270344)
chr5 (99-163)||(19979858-19979922)
[»] chr6 (22 HSPs)
chr6 (138-215)||(20432407-20432484)
chr6 (99-216)||(30912181-30912298)
chr6 (133-215)||(11327371-11327453)
chr6 (133-203)||(23506092-23506162)
chr6 (112-204)||(2912049-2912141)
chr6 (103-196)||(23898067-23898160)
chr6 (133-215)||(19748571-19748653)
chr6 (139-215)||(15527925-15528001)
chr6 (133-215)||(7223753-7223835)
chr6 (160-209)||(20981363-20981412)
chr6 (120-201)||(31407561-31407642)
chr6 (133-204)||(7621783-7621855)
chr6 (138-214)||(17543544-17543620)
chr6 (156-215)||(7918182-7918241)
chr6 (156-215)||(27890624-27890683)
chr6 (140-179)||(31108351-31108390)
chr6 (103-204)||(33592930-33593030)
chr6 (132-196)||(3573708-3573772)
chr6 (153-209)||(4841658-4841714)
chr6 (120-204)||(20399871-20399954)
chr6 (99-215)||(22498215-22498331)
chr6 (133-193)||(27614465-27614525)
[»] chr1 (22 HSPs)
chr1 (99-216)||(41032548-41032665)
chr1 (99-196)||(12513528-12513625)
chr1 (101-216)||(32881557-32881672)
chr1 (101-204)||(47786107-47786209)
chr1 (133-215)||(39845064-39845146)
chr1 (132-204)||(16434758-16434830)
chr1 (133-193)||(25146577-25146637)
chr1 (152-216)||(21242855-21242919)
chr1 (133-215)||(19009757-19009839)
chr1 (133-219)||(30619176-30619261)
chr1 (130-188)||(42179877-42179935)
chr1 (156-209)||(17055751-17055804)
chr1 (133-216)||(21846083-21846166)
chr1 (139-188)||(9321550-9321599)
chr1 (133-189)||(9954842-9954898)
chr1 (133-193)||(13100450-13100510)
chr1 (156-215)||(23528894-23528953)
chr1 (133-215)||(14074292-14074374)
chr1 (156-193)||(16125287-16125324)
chr1 (132-204)||(9128646-9128718)
chr1 (141-193)||(17197346-17197398)
chr1 (137-193)||(27502168-27502224)
[»] chr4 (22 HSPs)
chr4 (133-217)||(37240475-37240559)
chr4 (133-204)||(6346764-6346835)
chr4 (138-216)||(8010950-8011028)
chr4 (142-209)||(10394854-10394921)
chr4 (99-215)||(7452744-7452859)
chr4 (140-216)||(10143137-10143213)
chr4 (136-215)||(8743577-8743656)
chr4 (133-215)||(5361774-5361856)
chr4 (133-195)||(7045202-7045264)
chr4 (99-193)||(9770372-9770466)
chr4 (99-204)||(18459406-18459511)
chr4 (133-209)||(5943068-5943144)
chr4 (133-209)||(4157271-4157350)
chr4 (133-209)||(4157558-4157637)
chr4 (99-204)||(8889466-8889570)
chr4 (102-177)||(46664152-46664227)
chr4 (156-216)||(55476225-55476285)
chr4 (139-193)||(5375925-5375979)
chr4 (173-215)||(5884129-5884171)
chr4 (133-215)||(13023796-13023878)
chr4 (159-216)||(7045000-7045057)
chr4 (138-191)||(13551486-13551539)
[»] chr2 (20 HSPs)
chr2 (99-219)||(8428456-8428576)
chr2 (99-215)||(19245827-19245943)
chr2 (145-216)||(13502494-13502565)
chr2 (133-215)||(20063961-20064043)
chr2 (142-216)||(27407028-27407103)
chr2 (144-204)||(15627993-15628053)
chr2 (141-215)||(974576-974651)
chr2 (132-215)||(1405021-1405104)
chr2 (142-216)||(16767022-16767097)
chr2 (132-215)||(31237784-31237867)
chr2 (138-216)||(19262130-19262208)
chr2 (133-193)||(34167548-34167609)
chr2 (133-193)||(15588664-15588724)
chr2 (141-193)||(20034039-20034091)
chr2 (141-193)||(27523913-27523965)
chr2 (156-219)||(25538977-25539040)
chr2 (156-219)||(36430082-36430145)
chr2 (136-216)||(35565766-35565849)
chr2 (141-193)||(7302042-7302094)
chr2 (133-189)||(19492132-19492188)
[»] scaffold0603 (1 HSPs)
scaffold0603 (142-204)||(8777-8839)
[»] scaffold0042 (1 HSPs)
scaffold0042 (103-216)||(93483-93597)
[»] scaffold0534 (1 HSPs)
scaffold0534 (115-204)||(919-1008)
[»] chr8 (20 HSPs)
chr8 (115-204)||(17566347-17566436)
chr8 (99-216)||(17647234-17647351)
chr8 (133-204)||(6811068-6811139)
chr8 (99-204)||(29384087-29384192)
chr8 (133-216)||(24056379-24056462)
chr8 (133-219)||(15231855-15231941)
chr8 (101-185)||(11973942-11974026)
chr8 (133-192)||(2040380-2040439)
chr8 (133-216)||(22910012-22910095)
chr8 (99-189)||(11879864-11879954)
chr8 (99-189)||(11897280-11897370)
chr8 (133-215)||(24414096-24414178)
chr8 (133-215)||(45403267-45403349)
chr8 (133-215)||(26574926-26575008)
chr8 (159-216)||(15294906-15294963)
chr8 (159-216)||(15475275-15475332)
chr8 (151-193)||(7489175-7489217)
chr8 (154-216)||(15761188-15761250)
chr8 (156-193)||(27836131-27836168)
chr8 (133-193)||(19704266-19704326)
[»] scaffold0048 (1 HSPs)
scaffold0048 (99-215)||(61089-61205)
[»] scaffold0028 (1 HSPs)
scaffold0028 (99-216)||(145825-145942)
[»] scaffold0150 (1 HSPs)
scaffold0150 (145-216)||(33175-33246)
[»] scaffold0417 (1 HSPs)
scaffold0417 (138-203)||(7269-7334)
[»] scaffold0510 (1 HSPs)
scaffold0510 (136-196)||(16-76)
[»] scaffold0186 (1 HSPs)
scaffold0186 (133-215)||(8679-8761)
[»] scaffold0016 (1 HSPs)
scaffold0016 (133-215)||(56234-56316)
[»] scaffold2084 (1 HSPs)
scaffold2084 (132-193)||(88-149)
[»] scaffold0007 (1 HSPs)
scaffold0007 (140-181)||(220433-220474)
[»] scaffold0182 (1 HSPs)
scaffold0182 (141-209)||(24630-24698)
[»] scaffold0079 (1 HSPs)
scaffold0079 (141-193)||(14743-14795)


Alignment Details
Target: chr7 (Bit Score: 69; Significance: 1e-30; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 99 - 219
Target Start/End: Original strand, 26565323 - 26565443
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||| || ||| || ||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |    
T  26565323 aaggttgtcaaaattgggatctttcttcaggttaaaagggaagaacaaaaacgaaaatcgtaaaatcgtaatcaaaatcgaaggattttactcaactact 26565422  T
Q  199 tttgtaaaatccatataaaaa 219  Q
    |||||| |||| |||||||||    
T  26565423 tttgtagaatcaatataaaaa 26565443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 22687042 - 22687159
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||| ||| | ||||| |||||| ||||  |||||||| ||||||||||| ||||||||||||  || |||||| ||||||||||||||||||| |    
T  22687042 aaggttgttaaaatcgggattttgcttcagatcgaaagagaagagcaaaatcgagaatcgtaaaatcacaaccaaaattgaagaattttactcaactact 22687141  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  22687142 tttgtagaatcgatataa 22687159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 4575083 - 4574968
Alignment:
Q  100 aggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattt 199  Q
    ||||||||||| ||| ||| || ||| || || |||| |||||| |||||| ||||||||||||||| |||||||||| ||||||| |||||||||| ||    
T  4575083 aggttgtcaaaattgagatttttcttcaggttgaaagggaatagtaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaagaattctactcaactactt 4574984  T
Q  200 ttgtaaaatccatata 215  Q
    ||||| |||| |||||    
T  4574983 ttgtagaatcgatata 4574968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 39182510 - 39182393
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | | ||| |||||| || |  |||||||| || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  39182510 aaggttgtcaaaatcgtgattttgcttcagttccaaagagaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 39182411  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  39182410 tttgtagaatcgatataa 39182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 1977868 - 1977800
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 201  Q
    |||||||| || |||||||| ||||||||||||| |||||||||||||| ||||||||||| |||||||    
T  1977868 aaagagaagagaaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaattattttt 1977800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 208
Target Start/End: Complemental strand, 11325332 - 11325223
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||| |||||| |  | ||||||||| ||||||||||| ||||||||||||| || |||| |  |||  ||||||||||||| |    
T  11325332 aaggttgtcaaaattgggatcttgcttcacgtcaaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaatttcaagggttttactcaactact 11325233  T
Q  199 tttgtaaaat 208  Q
    | ||||||||    
T  11325232 tctgtaaaat 11325223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 17741960 - 17741896
Alignment:
Q  137 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 201  Q
    |||||||||||||||||||||||||||| | ||||||||| |||| |||||||| ||||| ||||    
T  17741960 agaatagcaaaatcgaaaatcgtaaaattgcaatcaaaattgaaggattttacttaactactttt 17741896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 14055577 - 14055506
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14055577 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14055506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 14365605 - 14365534
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||  ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |||||||    
T  14365605 aaagagatgagcaaaatcgacaatggtaaaatcgcaaccaaaatcgaaggattttactcaactacttttgta 14365534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 5058882 - 5058788
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||| | ||||  || ||| |||| ||||| |||||||||||||| || ||||||||| | |||||||||||||| |||||| ||||    
T  5058882 aaggttgtcaaaatcgggactttacttcagatcaaaagggaatagcaaaatcggaattcgtaaaattgcaatcaaaatcgaaggattttaatcaa 5058788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 8343611 - 8343697
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    |||||||| | |||||| || ||||||||||  | |||||||||||||| |||||||||||||| ||||||| |||  |||||||||    
T  8343611 aaagagaagaacaaaattgacaatcgtaaaaatgcaatcaaaatcgaagtattttactcaactacttttgtagaattgatataaaaa 8343697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 17811702 - 17811586
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||  || ||| || | ||||| ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | |    
T  17811702 aaggttgtcaaaatcgggactttacttcaggtcaaaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaagattttactcaaggact 17811603  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  17811602 tttgtagaatcgatata 17811586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 8329788 - 8329859
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||||| |||||| || |||| |||||| | ||||||||| |||| |||||||||||||| |||||||    
T  8329788 aaagagaataacaaaattgacaatcataaaattgcaatcaaaattgaaggattttactcaactacttttgta 8329859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 8329873 - 8329924
Alignment:
Q  153 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||||||||| |||||||||| ||| |||||||||||||| |||||||    
T  8329873 aaatcgtaaaatcgcaatcaaaatcaaaggattttactcaactacttttgta 8329924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 21846256 - 21846339
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||| | ||||||||| |||||| |||||||| || ||||||||||| |||||| ||||||| |||| || |||| ||||||    
T  21846256 aaagaggagagcaaaatcaaaaatcctaaaatcgcaaccaaaatcgaaggattttaatcaactacttttatagaatcgatataa 21846339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 7307245 - 7307203
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaaga 182  Q
    |||||||||||| |||||||||||||| |||||||||||||||    
T  7307245 atagcaaaatcgcaaatcgtaaaatcgcaatcaaaatcgaaga 7307203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 17809006 - 17809044
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaat 176  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  17809006 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaat 17809044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 27221734 - 27221676
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 191  Q
    |||||| ||||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  27221734 aaagagtatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactc 27221676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 7730167 - 7730239
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||||||| |||||||||   ||||||||||||| || ||||||||||   ||||||||||||| |||||||    
T  7730167 aaaagagaagagcaaaatcatcaatcgtaaaatcgcaaccaaaatcgaatggttttactcaactacttttgta 7730239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 8304406 - 8304346
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||| |||||||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  8304406 aaagagagtagcaaaatcgcgactcgtaaaatcacaatcaaaatcgaaggattttactcaa 8304346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 204
Target Start/End: Original strand, 8346360 - 8346411
Alignment:
Q  153 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||||||| |||| |||||||||| ||| |||||||||||||| |||||||    
T  8346360 aaatcgtaatatcgcaatcaaaatcaaaggattttactcaactacttttgta 8346411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 215
Target Start/End: Original strand, 21157521 - 21157584
Alignment:
Q  152 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||||  ||||||||| |||| |||||| ||||||| ||||||| |||| |||||    
T  21157521 aaaatcgtaaaatctcaatcaaaattgaaggattttattcaactacttttgtagaatctatata 21157584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 201
Target Start/End: Original strand, 48621470 - 48621532
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 201  Q
    |||| ||||||||||||||||||||||| |||  |||| |||  |||||||||||||| ||||    
T  48621470 aataacaaaatcgaaaatcgtaaaatcgcaattgaaattgaaagattttactcaactactttt 48621532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 9685108 - 9685161
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 191  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  9685108 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 9685161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 10285678 - 10285759
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaa 180  Q
    |||||||||||| | ||||| || ||| || |  |||||||| || |||||| | ||||||||||||| |||||||||||||    
T  10285678 aaggttgtcaaaatcgggattttacttcaggtcgaaagagaagagaaaaatcaacaatcgtaaaatcgcaatcaaaatcgaa 10285759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 23618265 - 23618298
Alignment:
Q  160 aaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||| ||||||||||||||||||||||||||    
T  23618265 aaaatcgcaatcaaaatcgaagaattttactcaa 23618298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 4247653 - 4247593
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||| ||||||| || ||| |||||||||||  ||||||||| |||| ||||||    
T  4247653 tcgtaaaatcgcaatcaaattcaaaggattttactcaaggatttttgtagaatcgatataa 4247593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 139 - 215
Target Start/End: Complemental strand, 5715599 - 5715523
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| |||||||  | ||||||||||| |||||||||||| | |||||||||||  | ||||||| |||| |||||    
T  5715599 aatagaaaaatcgggactcgtaaaatcgcaatcaaaatcgagggattttactcaaggacttttgtagaatcgatata 5715523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 26340194 - 26340242
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||| ||||| ||||  |||| ||||||||||||||||||||||||||    
T  26340194 aaaatagaaaaacgtattatcgcaatcaaaatcgaagaattttactcaa 26340242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 3449085 - 3449202
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||| ||||||||| || |||||||| ||||||||||| ||||||||||||| || ||||||||||  |||||| ||||||| |    
T  3449085 aaggttgtcaaaattgggattttgctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaatgattttattcaactact 3449184  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  3449185 tttgtagaatcgatataa 3449202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 17064661 - 17064544
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||| |||||| || |  ||||| || | ||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |    
T  17064661 aaggttgtcaaaattgggattttgcttcaggtcgaaagaaaagatcaaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactact 17064562  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  17064561 tttgtagaatcaatataa 17064544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 27676756 - 27676673
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||| ||| |||||||||||||||| |||||||| |||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  27676756 aaagggaagagcaaaatcgaaaatcttaaaatcgcaatcaaaatcgaaagattttactcaactacttttgtaaaatcgatataa 27676673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 41671533 - 41671428
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| |||||| || |  |||||||| ||||||||||| ||| ||||||||| || ||||||||||| |||||||||||||| |    
T  41671533 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagaagagcaaaatcgataattgtaaaatcgcaaccaaaatcgaaggattttactcaactact 41671434  T
Q  199 tttgta 204  Q
    ||||||    
T  41671433 tttgta 41671428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 25870097 - 25870214
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | | ||| ||||||||| |  |||||||| || |||||||| ||||||||||||| || ||||||| ||| ||||||||||||||      
T  25870097 aaggttgtcaaaatcgagattttgctttaggtcgaaagagaagagtaaaatcgacaatcgtaaaatcgcaaccaaaatcaaaggattttactcaactaag 25870196  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  25870197 tttgtagaatcgatataa 25870214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 28746130 - 28746014
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||  || ||| || |  ||||| |||||||||||||  | ||||||||||| ||||||||||||||||||||||||||  | |    
T  28746130 aaggttgtcaaaattgggactttacttcaggtcgaaagaaaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaagaattttactcaagaact 28746031  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  28746030 tttgtagaatcgatata 28746014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 28136070 - 28136007
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaat 208  Q
    |||||||| |||||||||||||  ||||||||||||| |||||||||||||| |||||||||||    
T  28136070 aaaatcgagaatcgtaaaatcgctatcaaaatcgaaggattttactcaactacttttgtaaaat 28136007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 8592214 - 8592290
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||||||||||||| | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  8592214 aatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 8592290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 9152794 - 9152870
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||||||| || |||||| | |||||||||||||||| ||||||||||  |||| ||||||||||||||||| ||||    
T  9152794 aaagagaagagtaaaatcaacaatcgtaaaatcgtaaccaaaatcgaaagatttgactcaactatttttgtagaatc 9152870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 20766710 - 20766770
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||| |||||||||||| | ||||||||||| ||||||||||||| ||||||||||||    
T  20766710 aaagagagtagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaaaattttactcaa 20766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 6136387 - 6136461
Alignment:
Q  142 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||| ||||||||||||||| |||||||||| ||  |||||||||||||| |||| || |||| ||||||    
T  6136387 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttatagaatcgatataa 6136461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 13006180 - 13006089
Alignment:
Q  97 cgaaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 189  Q
    ||||| |||||||| | ||||| ||||||||| |  |||| |||||||||||| |||||||||||||||| ||||||||| |||  |||||||    
T  13006180 cgaagattgtcaaaatcgggat-ttgctttaggtcgaaagggaatagcaaaattgaaaatcgtaaaatcgcaatcaaaattgaatgattttac 13006089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 8560265 - 8560348
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| || |||||||||||| | |||| |||||| |||||||||||||| |||||||||||   |||||||| |||| |||||    
T  8560265 aaaagggagtagcaaaatcgagactcgtgaaatcgcaatcaaaatcgaaggattttactcaaggttttttgtagaatcaatata 8560348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 13286252 - 13286181
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||| ||| ||||||||||| |||||||||| ||  |||||||||||||| ||||||| |||| ||||||    
T  13286252 aaaatcaaaactcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgtagaatcgatataa 13286181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 22137597 - 22137514
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| |||||||||   ||| ||||||||  || ||||||| |||||||||||||||||| ||||||| |||| ||||||    
T  22137597 aaagagaagagcaaaatcagcaatagtaaaatcacaaccaaaatcaaagaattttactcaactacttttgtagaatcgatataa 22137514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 201
Target Start/End: Original strand, 15515033 - 15515135
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||| ||| | ||||| |||||| || || |||||||  | ||||||||| ||| |||||||| |||  |||||||||| |||||||||||||| |    
T  15515033 aaggttgttaaaatcgggattttgcttcaggttgaaagagatgaccaaaatcgacaattgtaaaatcttaactaaaatcgaagtattttactcaactact 15515132  T
Q  199 ttt 201  Q
    |||    
T  15515133 ttt 15515135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 10872490 - 10872607
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| |  |||| || ||| || | ||||| ||| || |||||| |||||| |||||||| ||||||||| |||| |||||||| ||||| |    
T  10872490 aaggttgtcaaaatcaggattttacttcaggtcaaaagggaagagaaaaatcaaaaatcataaaatcgcaatcaaaattgaaggattttactaaactact 10872589  T
Q  199 tttgtaaaatccatataa 216  Q
    |||| | |||| ||||||    
T  10872590 tttgaagaatcgatataa 10872607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 17796866 - 17796809
Alignment:
Q  152 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  17796866 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 17796809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 19105306 - 19105249
Alignment:
Q  152 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    ||||||||||||| | ||| |||||||||| |||||||||||||| ||||||| ||||    
T  19105306 aaaatcgtaaaattgcaattaaaatcgaagcattttactcaactacttttgtagaatc 19105249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 3041535 - 3041483
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  3041535 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 3041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 22971121 - 22971069
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  22971121 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 22971069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 21963751 - 21963668
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21963751 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21963668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 21986187 - 21986104
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| ||||||||||| ||| ||||||||  || ||||||  ||||||||||||||| || |||| || |||| ||||||    
T  21986187 aaagagaagagcaaaatcgacaatagtaaaatcacaaccaaaattaaagaattttactcaattacttttatagaatcgatataa 21986104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 24620005 - 24620088
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| |||||||||||| |  | | ||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  24620005 aaaagggaatagcaaaattgggacttgtaaaatcgcaatcaaaatcgaaggattttactcaaagacttttgtagaatcgatata 24620088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 8155939 - 8156009
Alignment:
Q  134 aagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||||| |||||||| || |||| |||||||| ||  || ||||||| |||||||||||||| |||||||    
T  8155939 aagagaagagcaaaatggacaatcataaaatcgcaactaagatcgaaggattttactcaactacttttgta 8156009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 27090762 - 27090680
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| |||||| ||||| | ||||||||| |||| ||| |||||||||| |||||||||||  | ||||||| |||| |||||    
T  27090762 aaagggaatagaaaaattgcaaatcgtaagatcgcaataaaaatcgaaggattttactcaaggaattttgtataatcgatata 27090680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 30727668 - 30727722
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttt 187  Q
    |||| ||||||||||||||| | || |||||||| |||||||||||| |||||||    
T  30727668 aaagggaatagcaaaatcgagactcctaaaatcgcaatcaaaatcgatgaatttt 30727722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 18014288 - 18014251
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  18014288 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 18014251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 52519884 - 52519839
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 185  Q
    ||||||||||||||||| ||||||||| |||| |||| ||||||||    
T  52519884 atagcaaaatcgaaaattgtaaaatcgcaatcgaaatagaagaatt 52519839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 19348874 - 19348818
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 188  Q
    ||||| || |||||||||||| | ||||||||||| ||||||||| |||| ||||||    
T  19348874 aaaagggagtagcaaaatcgagactcgtaaaatcgcaatcaaaatggaaggatttta 19348818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 219
Target Start/End: Complemental strand, 24648317 - 24648243
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| |||| |||||||||    
T  24648317 aaaatcgaaaatcgtaaaatcgtaatcaaaatcaaaggattttactcaactacttttgtagaatcaatataaaaa 24648243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 43005634 - 43005750
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| |||||||||||  ||||  ||||| ||| |||||||| ||||||||| ||||||||| |||  |||||||||||||  |    
T  43005634 aaggttgtcaaaatcgggattttgctttagatcgaaaggaaatagaaaattcgaaaattgtaaaatcgcaatcaaaattgaaagattttactcaacttct 43005733  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  43005734 tttgtagaatcgatata 43005750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 27339996 - 27340055
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 192  Q
    |||| |||||||||||||||||||||| |||||| |||||||||||||| ||||||||||    
T  27339996 aaagggaatagcaaaatcgaaaatcgtgaaatcgcaatcaaaatcgaaggattttactca 27340055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 18844035 - 18843953
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||  | ||||||||||| ||||||||||| || |||||||||||  | ||||||| ||||||||||    
T  18844035 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcggagtattttactcaaggacttttgtagaatccatata 18843953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 17624902 - 17624839
Alignment:
Q  152 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||||| |||||||||| ||  |||||||||||||| |||||| ||||| |||||    
T  17624902 aaaatcgtaaaatcgcaatcaaaatcaaaagattttactcaactacttttgttaaatcaatata 17624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 19377923 - 19377840
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||| ||||||||||||||| ||||||||| |   |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  19377923 aaagggaatagcaaaatcgagaatcgtaaatttacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 19377840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 215
Target Start/End: Original strand, 23172265 - 23172319
Alignment:
Q  161 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||||||||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  23172265 aaatcgtaatcaaaatcgaagaattttactcaaagacttttgtagaatcgatata 23172319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 43235188 - 43235102
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    |||| |||||||||||||   | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||||||    
T  43235188 aaagggaatagcaaaatcagtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatataaaaa 43235102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 15051914 - 15051966
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  15051914 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 15051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 22645536 - 22645596
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||| |||||||||||| || | ||||||||| | |||||||||||||| |||||||||||    
T  22645536 aaagggaatagcaaaattgagactcgtaaaattgcaatcaaaatcgaaggattttactcaa 22645596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 38158101 - 38158149
Alignment:
Q  161 aaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||||| || ||||||||||| |||||||||||||||||||||| ||||    
T  38158101 aaatcgcaaccaaaatcgaaggattttactcaactatttttgtagaatc 38158149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 15446447 - 15446408
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 179  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  15446447 atagcaaaatcgaaactcgtaaaatcgcaatcaaaatcga 15446408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 41427731 - 41427681
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 191  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||    
T  41427731 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactc 41427681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 29270344 - 29270303
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaa 173  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  29270344 aaaagagaatatcaaaatcgaaaatagtaaaatcataatcaa 29270303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 19979922 - 19979858
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaa 163  Q
    ||||| |||||| | ||||| |||||| || | ||||||||| ||||||||||| ||||||||||    
T  19979922 aaggtggtcaaaatcgggattttgcttcaggtcaaaagagaagagcaaaatcgacaatcgtaaaa 19979858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 20432407 - 20432484
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||||| |||| |||||    
T  20432407 gaatagcaaaatcgaaaatcgtaaaatcgcaatcaaaattgaagaattttacttaactagttttgtagaatcgatata 20432484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 30912181 - 30912298
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | || || |||||| || || |||||||||||||||||||| ||||||||||||  || |||||| |||| |||||| ||||||| |    
T  30912181 aaggttgtcaaaatcggaattttgcttcaggttgaaagagaatagcaaaatcgataatcgtaaaatctcaaccaaaattgaaggattttattcaactact 30912280  T
Q  199 tttgtaaaatccatataa 216  Q
    ||||||||||| ||||||    
T  30912281 tttgtaaaatcgatataa 30912298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 11327371 - 11327453
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  11327371 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 11327453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 23506162 - 23506092
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 203  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||| |||||| ||||||||||||||    
T  23506162 aaagagaatagcaaaatcgaaaattgtaaaatcacaattaaaatcgaaggattttagtcaactatttttgt 23506092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 2912049 - 2912141
Alignment:
Q  112 ttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||||| |||||| || || |||||||| ||| ||||||| |||||||||||| ||||| |||| |||| |||||||||||||| |||||||    
T  2912049 ttgggattttgcttcaggttgaaagagaagagcgaaatcgataatcgtaaaatcataatcgaaattgaaggattttactcaactacttttgta 2912141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 23898160 - 23898067
Alignment:
Q  103 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 196  Q
    |||||||| | ||||| |||||| || |  || ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  23898160 ttgtcaaaatcgggattttgcttcaggtcgaatgagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 23898067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 19748653 - 19748571
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  19748653 aaagggaatagcaaaatcgggattcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 19748571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 215
Target Start/End: Original strand, 15527925 - 15528001
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||| || ||| ||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  15527925 aatagcaaaatcggaactcggaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 15528001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 7223835 - 7223753
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||  | ||||||||| | |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  7223835 aaagggaatagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 7223753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 20981412 - 20981363
Alignment:
Q  160 aaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||||||||||||||||| |||||||||||||||||  ||||||| ||||    
T  20981412 aaaatcgtaatcaaaatcaaagaattttactcaactgcttttgtagaatc 20981363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 120 - 201
Target Start/End: Complemental strand, 31407642 - 31407561
Alignment:
Q  120 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 201  Q
    ||||||||| || |||| ||||| |||||||||||||  |||||||  |||||||||| ||  |||||||||||||| ||||    
T  31407642 ttgctttaggttgaaagggaataacaaaatcgaaaattataaaatcacaatcaaaatcaaaagattttactcaactactttt 31407561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 7621783 - 7621855
Alignment:
Q  133 aaagagaatagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||| ||||| |||||||||||| || |||||  || |||||||| ||||||||||||||||||| |||||||    
T  7621783 aaagggaataacaaaatcgaaaaatcataaaactgttatcaaaattgaagaattttactcaactacttttgta 7621855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 17543544 - 17543620
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatat 214  Q
    ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||    
T  17543544 gaatagcaaaatcgggactcataaaatcgaaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatat 17543620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 7918182 - 7918241
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||| | ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  7918182 tcgtaaaattgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcaatata 7918241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 27890683 - 27890624
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||||||||||| |||| |||||||||||  | ||||||| |||| |||||    
T  27890683 tcgtaaaatcgtaatcaaaattgaaggattttactcaaggacttttgtagaatcgatata 27890624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 31108390 - 31108351
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcga 179  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  31108390 atagcaaaatcgtaaatcgtaaaatcgcaatcaaaatcga 31108351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 33592930 - 33593030
Alignment:
Q  103 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttg 202  Q
    |||||||| | ||||| |||||| | ||  |||| ||||| |||||| |||||||||||||| | |||| ||||||||  | |||||||||||| |||||    
T  33592930 ttgtcaaaatcgggattttgcttcatatcgaaagggaataacaaaattgaaaatcgtaaaattgcaatcgaaatcgaatga-tttactcaactacttttg 33593028  T
Q  203 ta 204  Q
    ||    
T  33593029 ta 33593030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 3573708 - 3573772
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 196  Q
    ||||| |||||||||||||   | ||||||||||| ||||||||||| || | ||||||||||||    
T  3573708 aaaagggaatagcaaaatcaggactcgtaaaatcgcaatcaaaatcgtaggaatttactcaacta 3573772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 4841658 - 4841714
Alignment:
Q  153 aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||||| ||||||  |||||||||| ||| |||||||||||||| ||||||| ||||    
T  4841658 aaatcgaaaaatcacaatcaaaatcaaaggattttactcaactacttttgtagaatc 4841714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 20399871 - 20399954
Alignment:
Q  120 ttgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||| ||||| |||| || ||| |||| ||||||| ||||||||  ||| ||||| ||||||||||||||||||  |||||||    
T  20399871 ttgcttcagattgaaag-gattagaaaaaacgaaaattgtaaaatcacaataaaaattgaagaattttactcaacttgttttgta 20399954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 22498215 - 22498331
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||||||  || ||| || |  |||| |||||||||||| |  | ||||||||||| ||||||||| |||  |||||||||||  | |    
T  22498215 aaggttgtcaaaattgggactttacttcaggtcgaaagggaatagcaaaattgggactcgtaaaatcgcaatcaaaattgaacgattttactcaaagact 22498314  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  22498315 tttgtagaatcgatata 22498331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 27614465 - 27614525
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||| |||||| |||||||  | ||||||||||  |||||||||||||| |||||||||||    
T  27614465 aaagggaatagtaaaatcgggactcgtaaaatcacaatcaaaatcgaaggattttactcaa 27614525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 99 - 216
Target Start/End: Original strand, 41032548 - 41032665
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| || ||| || || |||||||| |||||||| || ||||||||||||| ||  ||||||||||||||||||||||||| |    
T  41032548 aaggttgtcaaaatagggattttacttcaggttgaaagagaagagcaaaattgataatcgtaaaatcgcaactaaaatcgaagaattttactcaactagt 41032647  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  41032648 tttgtagaatcgatataa 41032665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 196
Target Start/End: Complemental strand, 12513625 - 12513528
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 196  Q
    |||||||||||| ||||||| |||||| || | ||||||||| ||||||||||| ||| ||||||||| || ||||||| ||| ||||||||||||||    
T  12513625 aaggttgtcaaaattgggattttgcttcaggtcaaaagagaagagcaaaatcgacaattgtaaaatcgcaaccaaaatcaaaggattttactcaacta 12513528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 32881672 - 32881557
Alignment:
Q  101 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 200  Q
    |||| ||||| | ||||| |||||| ||||| |||||||| ||||||||||| ||||||||||||| ||   ||||||||| ||||||||||||||  ||    
T  32881672 ggttttcaaaatcgggattttgcttcagattgaaagagaaaagcaaaatcgacaatcgtaaaatcgcaactgaaatcgaaggattttactcaactacgtt 32881573  T
Q  201 tgtaaaatccatataa 216  Q
    |||| |||| ||||||    
T  32881572 tgtagaatcgatataa 32881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 101 - 204
Target Start/End: Complemental strand, 47786209 - 47786107
Alignment:
Q  101 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttt 200  Q
    |||||||||| | ||||| || |||||| || |||||||| ||||||||||| ||||||||||||  || ||||||||||| |||||||||||||| |||    
T  47786209 ggttgtcaaaatcgggatttt-ctttaggttgaaagagaagagcaaaatcgacaatcgtaaaatcacaaccaaaatcgaaggattttactcaactacttt 47786111  T
Q  201 tgta 204  Q
    ||||    
T  47786110 tgta 47786107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 39845064 - 39845146
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||||||||||||||||||||||| ||||||| | ||| ||||| |||  |||||||||||||||||||||||| || |||||    
T  39845064 aaagagaatagcaaaatcgaaaattgtaaaattgcaattaaaattgaatgattttactcaactatttttgtaaagtcgatata 39845146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 16434830 - 16434758
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||| ||||||||||||||||||||||||||| | |||||||||||||| ||||||||| || | |||||||    
T  16434830 aaaagggaatagcaaaatcgaaaatcgtaaaattgcaatcaaaatcgaaggattttactcgacaacttttgta 16434758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 25146577 - 25146637
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||| |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  25146577 aaagggaatagcaaaatcggaaatcgtaaaatcgcaatcaaaatcgaaggattttactcaa 25146637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 21242855 - 21242919
Alignment:
Q  152 aaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||||||||||| | ||| ||||||||||||||||||| ||||||| |||| ||||||    
T  21242855 aaaatcgtaaaatcgtaattacaattgaagaattttactcaactaattttgtagaatcgatataa 21242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 19009757 - 19009839
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| |||||||||||  | |||||||||||| |||||    
T  19009757 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggattttactcaagaacttttgtaaaatcgatata 19009839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 30619261 - 30619176
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    |||||||| ||||||||||| ||||||||| ||| ||  |||||||||| |||||||||||||| ||||||| |||| |||| ||||    
T  30619261 aaagagaagagcaaaatcgacaatcgtaaa-tcgcaacaaaaatcgaaggattttactcaactacttttgtagaatcgatatgaaaa 30619176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 130 - 188
Target Start/End: Original strand, 42179877 - 42179935
Alignment:
Q  130 ttaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 188  Q
    ||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||||||    
T  42179877 ttaaaagggaatagcataatcgaaactcgtaaaatcgcaatcaaaatcgaaggatttta 42179935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 17055751 - 17055804
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    ||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||    
T  17055751 tcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatc 17055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 21846083 - 21846166
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  21846083 aaagggaatagcaaaatcgggactcttaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 21846166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 9321550 - 9321599
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatttta 188  Q
    ||||||||||||| || ||||||||||| |||||||||||||| ||||||    
T  9321550 aatagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggatttta 9321599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 9954842 - 9954898
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 189  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||    
T  9954842 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttac 9954898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 13100510 - 13100450
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||| |||| ||||||||| || ||||||||||| |||||||||| ||| |||||||||||    
T  13100510 aaagggaatggcaaaatcggaactcgtaaaatcgcaatcaaaatcaaaggattttactcaa 13100450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 23528953 - 23528894
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  23528953 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 23528894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 14074292 - 14074374
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| |||||||||||| | || || |||||||  |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  14074292 aaagggaatagcaaaattggaactcataaaatcacaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 14074374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 16125287 - 16125324
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  16125287 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 16125324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 9128646 - 9128718
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||| ||||||||||||||  | ||||||||||   ||||||||||||| |||||||| ||  |||||||||    
T  9128646 aaaagggaatagcaaaatcgggactcgtaaaatcacgatcaaaatcgaaggattttactaaaggatttttgta 9128718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 17197346 - 17197398
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||||||| || ||||||||||| ||  |||||||||| |||||||||||    
T  17197346 tagcaaaatcggaactcgtaaaatcgcaactaaaatcgaaggattttactcaa 17197398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 27502168 - 27502224
Alignment:
Q  137 agaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||| ||| | || |||||| | |||||||||||||| |||||||||||    
T  27502168 agaatagcaaaaccgagactcataaaattgcaatcaaaatcgaaggattttactcaa 27502224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 37240559 - 37240475
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaa 217  Q
    |||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||||| |||| |||||||    
T  37240559 aaagagaagagctaaatcgacaatcgtaaaatcgcaatcaaaatcgaaggattttactcaactacttttgtagaatcgatataaa 37240475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 6346764 - 6346835
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||| ||| ||||||||||||||||||||||||  |||||||||||||| |||||||||||||| |||||||    
T  6346764 aaagggaagagcaaaatcgaaaatcgtaaaatcacaatcaaaatcgaaggattttactcaactacttttgta 6346835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 8010950 - 8011028
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||||||  | ||||||||||| |||||||||||||| ||||||||||||||||||| || |||| ||||||    
T  8010950 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaactatttttatagaatcgatataa 8011028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 10394921 - 10394854
Alignment:
Q  142 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    ||||||||| ||||||||||||||| |||||||||||||| | |||||||||||| ||||||| ||||    
T  10394921 agcaaaatcaaaaatcgtaaaatcgcaatcaaaatcgaaggactttactcaactacttttgtagaatc 10394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 7452859 - 7452744
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| || |||| |||||| || |  |||| ||| || ||| | |||||||||||||||| |||||||||||||| | |||||||||||| |    
T  7452859 aaggttgtcaaaattaggattttgcttcaggtcgaaagggaagagaaaagttgaaaatcgtaaaatcgcaatcaaaatcgaagga-tttactcaactact 7452761  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  7452760 tttgtagaatcaatata 7452744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 140 - 216
Target Start/End: Complemental strand, 10143213 - 10143137
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||  | ||||||||||||| |||||||||||||| |||||| ||||||| ||||||| |||| ||||||    
T  10143213 atagcaaaattaacaatcgtaaaatcgcaatcaaaatcgaaggattttattcaactaattttgtagaatcgatataa 10143137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 8743577 - 8743656
Alignment:
Q  136 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| |||||||||| ||||| |||| ||||||||||||||||||  ||||||||||||||  |||||| |||| |||||    
T  8743577 gagactagcaaaatcaaaaatagtaacatcgtaatcaaaatcgaaagattttactcaactacatttgtataatcgatata 8743656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 5361774 - 5361856
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||||||| |||||||| || ||||||||||| | || |||||||||||  ||||||||||||| ||||||| |||| |||||    
T  5361774 aaagagaagagcaaaatagacaatcgtaaaattgcaaacaaaatcgaagggttttactcaactacttttgtagaatcgatata 5361856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 7045264 - 7045202
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaact 195  Q
    |||| ||| ||||||||| |||||| |||||||| |||||||||||||| |||||||||||||    
T  7045264 aaagggaagagcaaaatcaaaaatcataaaatcgcaatcaaaatcgaaggattttactcaact 7045202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 193
Target Start/End: Complemental strand, 9770466 - 9770372
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||| | ||||  || |||||| |  |||| ||||||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  9770466 aaggttgtcaaaatcgggactttactttaggtcgaaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 9770372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 18459406 - 18459511
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | | ||| |||||| || || ||||  || ||||||||||| ||||||||||||| ||| |||||||||| |||| ||| ||||| |    
T  18459406 aaggttgtcaaaatcgagattttgcttcaggttgaaaggaaagagcaaaatcgacaatcgtaaaatcgcaattaaaatcgaaggatttgacttaactaat 18459505  T
Q  199 tttgta 204  Q
    ||||||    
T  18459506 tttgta 18459511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 133 - 209
Target Start/End: Original strand, 5943068 - 5943144
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||| ||| ||||||||| ||||||||||||||| ||  ||||| |||| |||||||||||||| ||||||| ||||    
T  5943068 aaagggaagagcaaaatcaaaaatcgtaaaatcgcaagtaaaattgaaggattttactcaactacttttgtagaatc 5943144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 4157350 - 4157271
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157350 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 4157637 - 4157558
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatc---gtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||| ||| ||||||||||||||||   ||||||||| |||||| ||||||  |||||||||||||| ||||||| ||||    
T  4157637 aaagggaagagcaaaatcgaaaatcattgtaaaatcgcaatcaagatcgaaagattttactcaactacttttgtagaatc 4157558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 204
Target Start/End: Complemental strand, 8889570 - 8889466
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| |||||| || |  |||||||  |||||||| || ||| ||||||||| || ||||||||||| || ||||||||||| |    
T  8889570 aaggttgtcaaaatcgggattttgcttcaggtcgaaagagag-agcaaaattgacaattgtaaaatcgcaaccaaaatcgaaggatcttactcaactact 8889472  T
Q  199 tttgta 204  Q
    ||||||    
T  8889471 tttgta 8889466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 177
Target Start/End: Original strand, 46664152 - 46664227
Alignment:
Q  102 gttgtcaaagttgggatattgctttagatt-aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatc 177  Q
    ||||||||| ||||||| |||||| || |  |||||| |||||||||||||||||||| ||||||| ||||||||||    
T  46664152 gttgtcaaaattgggattttgcttcaggtcgaaaaga-aatagcaaaatcgaaaatcggaaaatcgcaatcaaaatc 46664227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 55476285 - 55476225
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| ||||||    
T  55476285 tcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatataa 55476225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 5375979 - 5375925
Alignment:
Q  139 aatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||| |||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  5375979 aatagtaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 5375925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 173 - 215
Target Start/End: Original strand, 5884129 - 5884171
Alignment:
Q  173 aaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||| |||||||||||||||||||||| |||| |||||    
T  5884129 aaatcgaaggattttactcaactatttttgtagaatcaatata 5884171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 13023878 - 13023796
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||||||||||| || ||||||||||  |||||| || |||  ||||||| |||  | |||||||||||| |||||    
T  13023878 aaagagaatagcaaaatcggaactcgtaaaatcacaatcaagatagaatgattttacccaaggaattttgtaaaatcgatata 13023796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 7045057 - 7045000
Alignment:
Q  159 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| |||||||||||||  |||||||||||||| ||||| | |||| ||||||    
T  7045057 taaaatcgcaatcaaaatcgaatgattttactcaactacttttgaataatcgatataa 7045000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 13551486 - 13551539
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactc 191  Q
    ||||||||||||| | | ||||||||||| ||| |||||||||| |||||||||    
T  13551486 gaatagcaaaatcaagactcgtaaaatcgcaattaaaatcgaaggattttactc 13551539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 8428576 - 8428456
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| ||||||||| |  |||| |||||| |||||| |||||  |||||||| |||||||||||||| ||||| ||||||||||    
T  8428576 aaggttgtcaaaatcgggattttgctttaggtcgaaagggaatagaaaaatcaaaaattctaaaatcgcaatcaaaatcgaaggattttgctcaactatt 8428477  T
Q  199 tttgtaaaatccatataaaaa 219  Q
    |||||| |||| |||| ||||    
T  8428476 tttgtagaatcaatatcaaaa 8428456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 19245943 - 19245827
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| |||||| |  || |||| ||||||||||||| ||||||||||||||| |||||||||| ||| |||||||| ||||| |    
T  19245943 aaggttgtcaaaatcgggattttgcttcaagttgaaagggaatagcaaaatcaaaaatcgtaaaatcgcaatcaaaatctaaggattttacttaactact 19245844  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  19245843 tttgtagaatcgatata 19245827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 13502494 - 13502565
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||||||||||||||||||||||||||| |||| || ||| ||||||||||||||| |||| ||||||    
T  13502494 aaaatcgaaaatcgtaaaatcgtaatcaaaattgaaggatattagtcaactatttttgtagaatctatataa 13502565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 20064043 - 20063961
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||  | ||||||| |||| |||||    
T  20064043 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaagaattttactcaaggacttttgtagaatcgatata 20063961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 27407103 - 27407028
Alignment:
Q  142 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||||||||| |||||| |||| |||||||||| |||||||||||||||||| ||||| | |||| ||||||    
T  27407103 agcaaaatcgaaaaatcgtaatatcgcaatcaaaatccaagaattttactcaactacttttggataatcaatataa 27407028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 15628053 - 15627993
Alignment:
Q  144 caaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    ||||||||||||| ||||||| | ||||||||||||||  ||||||||||||| |||||||    
T  15628053 caaaatcgaaaattgtaaaatggaaatcaaaatcgaaggtttttactcaactacttttgta 15627993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 974651 - 974576
Alignment:
Q  141 tagcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  974651 tagcaaaatcggaaactcgtaaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 974576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Complemental strand, 1405104 - 1405021
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| ||||||||||||||  | || |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  1405104 aaaagggaatagcaaaatcggtactcataaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatcgatata 1405021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 16767097 - 16767022
Alignment:
Q  142 agcaaaatcgaaaa-tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||||||||| || |||||||| ||||||||| |||| |||||||||||||| |||| || |||| ||||||    
T  16767097 agcaaaatcgaaaaatcataaaatcgcaatcaaaattgaaggattttactcaactacttttatagaatcgatataa 16767022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 132 - 215
Target Start/End: Original strand, 31237784 - 31237867
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| |||||| |||||||  | ||||||||||| |||||| ||||||| |||||||||||  | |||||||||||| |||||    
T  31237784 aaaagggaatagtaaaatcgggactcgtaaaatcgcaatcaatatcgaaggattttactcaaggacttttgtaaaatcgatata 31237867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 19262130 - 19262208
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||||||  | ||||||||||| |||||||||||||  |||||||||||  | ||||||| |||| ||||||    
T  19262130 gaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaagattttactcaaggacttttgtagaatcgatataa 19262208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Complemental strand, 34167609 - 34167548
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatc-aaaatcgaagaattttactcaa 193  Q
    |||| ||||||||||||||||||||||||||||| |||| || ||||||  |||||||||||    
T  34167609 aaagggaatagcaaaatcgaaaatcgtaaaatcgcaatctaacatcgaatgattttactcaa 34167548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 15588664 - 15588724
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||| || |||||||| |||| |||||||| || ||||||||||| |||||||||||    
T  15588664 aaagagaaaagaaaaatcgacaatcataaaatcgcaaccaaaatcgaaggattttactcaa 15588724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 20034039 - 20034091
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||| | ||||||||||| ||||||||| |||| |||||||||||    
T  20034039 tagcaaaatcgagactcgtaaaatcgcaatcaaaattgaaggattttactcaa 20034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 27523913 - 27523965
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||||||||    
T  27523913 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27523965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Original strand, 25538977 - 25539040
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    ||||||||||| |||||||||  ||| |||||||| ||||| ||||||| |||| |||||||||    
T  25538977 tcgtaaaatcgcaatcaaaattaaaggattttactgaactacttttgtagaatcgatataaaaa 25539040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 36430145 - 36430082
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    ||||||||||| |||||||||||||| || ||||||||  ||||||||| |||| ||| |||||    
T  36430145 tcgtaaaatcgcaatcaaaatcgaaggatattactcaataatttttgtagaatcgataaaaaaa 36430082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 35565766 - 35565849
Alignment:
Q  136 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt---ttactcaactatttttgtaaaatccatataa 216  Q
    ||||| ||||||||||| ||| ||||||||| ||  |||||||||| |||   ||||||||||| ||||||| |||| ||||||    
T  35565766 gagaagagcaaaatcgataattgtaaaatcgcaactaaaatcgaaggattttattactcaactacttttgtagaatcgatataa 35565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 7302094 - 7302042
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||| | |||||||||||||| |||||||||||    
T  7302094 tagcaaaatcgggactcgtaaaattgcaatcaaaatcgaaggattttactcaa 7302042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 189
Target Start/End: Complemental strand, 19492188 - 19492132
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 189  Q
    |||||||| | ||||||  |||||||||||| ||||||||||||||| | |||||||    
T  19492188 aaagagaacaacaaaattaaaaatcgtaaaaccgtaatcaaaatcgatggattttac 19492132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 8777 - 8839
Alignment:
Q  142 agcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||    
T  8777 agcaaaatcgaaaatcataaaatcgtaatcaaaatcgaaggattttactcaactacttttgta 8839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 103 - 216
Target Start/End: Original strand, 93483 - 93597
Alignment:
Q  103 ttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcga-aaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactattttt 201  Q
    |||||||| || || | |||||| || |||||||| || ||||||||||| |||| |||||||||||||||||||||||| |||||| ||||||| ||||    
T  93483 ttgtcaaaattagggttttgcttcaggttaaaagaaaagagcaaaatcgacaaattgtaaaatcgtaatcaaaatcgaaggattttattcaactactttt 93582  T
Q  202 gtaaaatccatataa 216  Q
    ||| |||| ||||||    
T  93583 gtagaatcgatataa 93597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0534 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 1008 - 919
Alignment:
Q  115 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  1008 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 17566436 - 17566347
Alignment:
Q  115 ggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||| |||||| || | ||||| ||| |||||||| |||||||||||||| | ||||||||||||||||||||||||||||| |||||||    
T  17566436 ggattttgcttcaggtcaaaagggaagagcaaaattgaaaatcgtaaaattgcaatcaaaatcgaagaattttactcaactacttttgta 17566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 17647351 - 17647234
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||| ||| | ||||| |||||| || |  |||||||  ||||||||||| |||| |||||||| |||||||||||||| |||||||||||||| |    
T  17647351 aaggttgttaaaatcgggattttgcttcaggtcgaaagagatgagcaaaatcgacaatcataaaatcgcaatcaaaatcgaaggattttactcaactagt 17647252  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  17647251 tttgtagaatcgatataa 17647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 6811139 - 6811068
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgta 204  Q
    |||||||| ||||||||||| ||||||||||||| || |||||||||||||||||| ||||||| |||||||    
T  6811139 aaagagaagagcaaaatcgacaatcgtaaaatcgcaaccaaaatcgaagaattttaatcaactacttttgta 6811068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 99 - 204
Target Start/End: Original strand, 29384087 - 29384192
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| | ||||| |||||| || |  ||||| || || |||||||| ||||||||||||| || ||||||||||| |||||||||||||| |    
T  29384087 aaggttgtcaaaatcgggattttgcttcaggtcgaaagaaaagagaaaaatcgacaatcgtaaaatcgcaaccaaaatcgaaggattttactcaactact 29384186  T
Q  199 tttgta 204  Q
    ||||||    
T  29384187 tttgta 29384192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 24056379 - 24056462
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||| ||| |||||||| ||| ||| |||||| |||||||||||||||| |||||||||||||| ||||||| |||| ||||||    
T  24056379 aaagggaagagcaaaattgaatatcataaaatggtaatcaaaatcgaaggattttactcaactagttttgtagaatcaatataa 24056462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 15231941 - 15231855
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataaaaa 219  Q
    |||||||| ||||||||||| ||||||||||||| ||  ||||||| |  |||||||||||||| ||||||| |||| |||||||||    
T  15231941 aaagagaagagcaaaatcgacaatcgtaaaatcgcaactaaaatcgtacgattttactcaactacttttgtagaatcgatataaaaa 15231855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 11973942 - 11974026
Alignment:
Q  101 ggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaatt 185  Q
    |||||||||| |  |||| |||| | ||||| ||||||||||||||||||||||||| |||||||| |||| |||| ||||||||    
T  11973942 ggttgtcaaaatcaggattttgcatcagattgaaagagaatagcaaaatcgaaaatcataaaatcgcaatcgaaattgaagaatt 11974026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 2040439 - 2040380
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactca 192  Q
    ||||||| ||||||||||| || ||||||||||| |||||||||||||| ||||||||||    
T  2040439 aaagagagtagcaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttactca 2040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 22910012 - 22910095
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| || |||||||| ||||||||||||| || | |||| |||| |||||| ||||||||||||||| |||| ||||||    
T  22910012 aaagagaagagaaaaatcgacaatcgtaaaatcgcaaccgaaattgaaggattttattcaactatttttgtagaatcgatataa 22910095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 11879954 - 11879864
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 189  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11879954 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11879864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 99 - 189
Target Start/End: Complemental strand, 11897370 - 11897280
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttac 189  Q
    |||||||||||| | ||||| || ||| || | ||||| |||||| ||||||| || ||||||||||| |||||||||||||| |||||||    
T  11897370 aaggttgtcaaaatcgggattttacttcaggtcaaaagggaatagtaaaatcggaactcgtaaaatcgcaatcaaaatcgaaggattttac 11897280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 24414096 - 24414178
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||  | | ||||||||||| |||||||||||||| |||||||||||  ||||||||| |||| |||||    
T  24414096 aaagggaatagcaaaatttagactcgtaaaatcgcaatcaaaatcgaaggattttactcaagaatttttgtagaatcgatata 24414178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 45403349 - 45403267
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||| |||||||| ||  | ||||||| |||| |||||    
T  45403349 aaagggaatagcaaaatcgagactcgtaaaatcgcaatcaaaatcgaaggattttacttaaagacttttgtagaatcgatata 45403267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 26574926 - 26575008
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    ||||| ||||| ||||| ||| |||||||||||| ||||||||| |||| |||||||  |||||||| |||| ||| ||||||    
T  26574926 aaagacaatagaaaaattgaatatcgtaaaatcgcaatcaaaattgaaggattttacctaactatttatgtagaattcatata 26575008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 15294963 - 15294906
Alignment:
Q  159 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15294963 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15294906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 15475332 - 15475275
Alignment:
Q  159 taaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||| |||||||||||||| |||||||||||  | ||||||| |||||||||||    
T  15475332 taaaatcgcaatcaaaatcgaaggattttactcaagaacttttgtagaatccatataa 15475275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 7489175 - 7489217
Alignment:
Q  151 gaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||| ||||||||| |||||||||||| |||||||||||||    
T  7489175 gaaaattgtaaaatcgcaatcaaaatcgatgaattttactcaa 7489217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 15761188 - 15761250
Alignment:
Q  154 aatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    ||||||||||||| |||  ||||||||| ||||||||||| || ||||||| |||| ||||||    
T  15761188 aatcgtaaaatcgcaatataaatcgaaggattttactcaattacttttgtagaatcgatataa 15761250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 27836131 - 27836168
Alignment:
Q  156 tcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  27836131 tcgtaaaatcgcaatcaaaatcgaaggattttactcaa 27836168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 19704266 - 19704326
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||| ||||||||||||||  | ||||||||||| |||||||||| ||| | |||||||||    
T  19704266 aaagggaatagcaaaatcgggactcgtaaaatcgcaatcaaaatcaaaggaatttactcaa 19704326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 99 - 215
Target Start/End: Original strand, 61089 - 61205
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    ||||||| |||| | ||||| |||||| || | ||||||||| || |||||  ||||||||||||||  ||||||||||||||||||||||| ||||| |    
T  61089 aaggttgccaaaatcgggattttgcttcaggtcaaaagagaaaagtaaaatttaaaatcgtaaaatcacaatcaaaatcgaagaattttacttaactact 61188  T
Q  199 tttgtaaaatccatata 215  Q
    |||||| |||| |||||    
T  61189 tttgtagaatcgatata 61205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 145942 - 145825
Alignment:
Q  99 aaggttgtcaaagttgggatattgctttagattaaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatt 198  Q
    |||||||||||| ||| ||| |||||| || |  ||||| |||||  ||||||||||||||||||| | |||||||||||||| ||||||||||  || |    
T  145942 aaggttgtcaaaattgagattttgcttcaggtcgaaagaaaatagttaaatcgaaaatcgtaaaatagcaatcaaaatcgaaggattttactcacttact 145843  T
Q  199 tttgtaaaatccatataa 216  Q
    |||||| |||| ||||||    
T  145842 tttgtagaatcgatataa 145825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 33246 - 33175
Alignment:
Q  145 aaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatataa 216  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||  || ||||||| |||| ||||||    
T  33246 aaaatcgaaaattgtaaaatcgcaatcaaaatcgaagaattttactcacttacttttgtagaatcgatataa 33175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 7269 - 7334
Alignment:
Q  138 gaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgt 203  Q
    ||||||||||||||| | | |||||||||||||||||||||||| ||||||||||| || ||||||    
T  7269 gaatagcaaaatcgagacttgtaaaatcgtaatcaaaatcgaaggattttactcaagtacttttgt 7334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 16 - 76
Alignment:
Q  136 gagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaacta 196  Q
    ||||| ||||||||||| ||||||||||||| || ||||||||||| ||||||||||||||    
T  16 gagaagagcaaaatcgacaatcgtaaaatcgaaaccaaaatcgaaggattttactcaacta 76  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 133 - 215
Target Start/End: Complemental strand, 8761 - 8679
Alignment:
Q  133 aaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||| |||||||| || ||||||||||| ||||||||| |||| ||||||||||| |||||| ||| |||| |||||    
T  8761 aaagggaataacaaaatcggaactcgtaaaatcgcaatcaaaattgaaggattttactcaagtattttcgtagaatcgatata 8679  T

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Target: scaffold0016 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 56234 - 56316
Alignment:
Q  133 aaagagaatagcaaaatcgaaa-atcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatccatata 215  Q
    |||| ||||||||||||||| | ||| |||||||| |||||||||||||| |||||||||||  | ||||||| |||| |||||    
T  56234 aaagggaatagcaaaatcgagacatc-taaaatcgcaatcaaaatcgaaggattttactcaaggacttttgtagaatcgatata 56316  T

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Target: scaffold2084 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2084
Description:

Target: scaffold2084; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 149 - 88
Alignment:
Q  132 aaaagagaatagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    ||||| || |||||||||||  | ||||||||| ||||| |||||||||| |||||||||||    
T  149 aaaagggagtagcaaaatcgggactcgtaaaattgtaattaaaatcgaaggattttactcaa 88  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 220433 - 220474
Alignment:
Q  140 atagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaag 181  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  220433 atagcaaaatcgaaaatcgtaaaattgcaatcgaaatcgaag 220474  T

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Target: scaffold0182 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 24698 - 24630
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaactatttttgtaaaatc 209  Q
    |||||||||||  | ||||||||| |||||||||||| ||  ||||||||||| | |||||||| ||||    
T  24698 tagcaaaatcgggactcgtaaaattgtaatcaaaatcaaaagattttactcaaatttttttgtagaatc 24630  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 14743 - 14795
Alignment:
Q  141 tagcaaaatcgaaaatcgtaaaatcgtaatcaaaatcgaagaattttactcaa 193  Q
    |||||||||||  | ||||||||||| |||||||||||||| |||||| ||||    
T  14743 tagcaaaatcgggactcgtaaaatcgcaatcaaaatcgaaggattttattcaa 14795  T

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