View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_low_22 (Length: 246)
Name: NF11119_low_22
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 235
Target Start/End: Complemental strand, 28629365 - 28629178
Alignment:
| Q |
48 |
taccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctccatttgagtaaattggtttgtctattccagttgctttccaaaa |
147 |
Q |
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| T |
28629365 |
taccgcgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctccatttgagtatattgctttgtctattccagttgctttccagaa |
28629266 |
T |
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| Q |
148 |
tccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttggcaaaaatagtaaccttccttctctgctcct |
235 |
Q |
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| T |
28629265 |
tccagagccagtcactctatttggtctaacgctgttcctatattttcttcctctttggcaaaaaaagtaaccttccttctctgctcct |
28629178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 28614840 - 28614654
Alignment:
| Q |
48 |
taccgcgatagtaaacaagtgnnnnnnngagtccaacacaatcatttccttctgctccatttgagtaaattggtttgtctattccagttgctttccaaaa |
147 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
28614840 |
taccacgatagtaaacaagtgtttttttgagtccaacacaatcatttccttctgctccatttgagtaaattgctttgtctattccagttgctttccagaa |
28614741 |
T |
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| Q |
148 |
tccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttggcaaaaatagtaaccttccttctctgctcc |
234 |
Q |
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| T |
28614740 |
tccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctttggcaaaaaaagtaaccttccttttctgctcc |
28614654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 33727930 - 33727878
Alignment:
| Q |
122 |
ttgtctattccagttgctttccaaaatccagagccagtcactctatttggcct |
174 |
Q |
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| T |
33727930 |
ttgtctgttccagttgctttccaatacccagatccagctactctatttggcct |
33727878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 39633562 - 39633497
Alignment:
| Q |
137 |
gctttccaaaatccagagccagtcactctatttggcctaacgctgttcctatattttcttcctctt |
202 |
Q |
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| T |
39633562 |
gctttccaaaatccagatcctgtcactctattaggccttatgctgttcctatattttcttcctctt |
39633497 |
T |
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