View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11119_low_25 (Length: 208)

Name: NF11119_low_25
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11119_low_25
NF11119_low_25
[»] chr2 (22 HSPs)
chr2 (8-192)||(39387479-39387663)
chr2 (8-192)||(39196495-39196679)
chr2 (8-152)||(39223764-39223908)
chr2 (8-153)||(39396637-39396782)
chr2 (14-150)||(39472755-39472891)
chr2 (11-152)||(39205730-39205871)
chr2 (8-153)||(39216709-39216854)
chr2 (23-184)||(44624803-44624964)
chr2 (8-152)||(44895092-44895236)
chr2 (8-184)||(39371138-39371314)
chr2 (11-149)||(39478282-39478420)
chr2 (8-153)||(39413014-39413159)
chr2 (8-153)||(39153111-39153256)
chr2 (8-153)||(39380479-39380624)
chr2 (11-153)||(39138698-39138837)
chr2 (53-146)||(39188784-39188877)
chr2 (23-153)||(44615461-44615591)
chr2 (56-184)||(39421219-39421344)
chr2 (11-153)||(39425521-39425663)
chr2 (53-124)||(31606537-31606608)
chr2 (55-111)||(39099681-39099737)
chr2 (53-153)||(39604368-39604468)
[»] chr5 (2 HSPs)
chr5 (8-192)||(33562302-33562486)
chr5 (8-183)||(17060668-17060843)
[»] chr7 (1 HSPs)
chr7 (11-149)||(19808959-19809094)
[»] chr8 (2 HSPs)
chr8 (9-153)||(45343017-45343161)
chr8 (93-153)||(44730167-44730227)
[»] chr6 (1 HSPs)
chr6 (8-152)||(16114420-16114564)
[»] chr3 (1 HSPs)
chr3 (19-111)||(51576079-51576171)
[»] chr4 (1 HSPs)
chr4 (9-87)||(33152230-33152308)


Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 39387479 - 39387663
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39387479 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 39387578  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtgaggttctcat 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| |||||||||||||||||    
T  39387579 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttctttttttacacaagtttcaatttttggtgaggttctcat 39387663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 39196495 - 39196679
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||||||||||||||| |||||| |||||||||    |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39196495 gcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtat 39196594  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtgaggttctcat 192  Q
    | || |||||||||||||| ||||||   |||||||||||||||||       ||||||| || ||||| ||||||| |||||||    
T  39196595 tgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggtttaatatctggtgagattctcat 39196679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 39223908 - 39223764
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||| |||| |||||||||||| |||||  |||||||||    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  39223908 gcaaaaagatccagaacttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtat 39223809  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgctt 152  Q
    | |||||||||||  |||||||||||   ||||||||||||||||    
T  39223808 tgtctttcatgttttcttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 39396637 - 39396782
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||||||||||||||| || ||| ||  |||||  ||||||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  39396637 gcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtat 39396736  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    ||||| | |||| |||| | |||||| | |||||||||| ||||||    
T  39396737 tttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttc 39396782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 39472755 - 39472891
Alignment:
Q  14 agctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctt 113  Q
    |||||||| ||||||||||| |||||| ||  |||||   ||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||    
T  39472755 agctccaagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctt 39472854  T
Q  114 tcatgttagcttttaaatcacgcgctagcttcaatgc 150  Q
    |||||||| |||| |||||| | || |||||||||||    
T  39472855 tcatgttaactttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 39205730 - 39205871
Alignment:
Q  11 aaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatttt 110  Q
    |||| ||| |||||||||||||  |||||| |||||||||    |||||| ||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  39205730 aaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtatttt 39205829  T
Q  111 ctttcatgttagcttttaaatcacgcgctagcttcaatgctt 152  Q
    ||||||| |||||||| || |||   ||||||||||||||||    
T  39205830 ctttcatcttagctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 39216854 - 39216709
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    ||||||||||||||||||||||||||  ||||| ||  || ||  |||||||||||||||||||| |||||||| |||||  |||||||||||| |||||    
T  39216854 gcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtat 39216755  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    ||||  ||||||||| ||| ||||||   |||||||||||||||||    
T  39216754 tttcactcatgttagatttcaaatcaaatgctagcttcaatgcttc 39216709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 44624964 - 44624803
Alignment:
Q  23 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 122  Q
    ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| || |||||  ||||| |||||||||||||||||||||||||||    
T  44624964 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataattttcagtattttctttcatgttag 44624865  T
Q  123 cttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtgag 184  Q
    |||| || |||||||||||||||||||||||       ||||||| || |||||||||||||    
T  44624864 ctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgag 44624803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 44895092 - 44895236
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    ||||||||||||||||||||  |||| || ||| ||  || ||  |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||    
T  44895092 gcaaaaagctccaaaacttcgccttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtat 44895191  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgctt 152  Q
    || |||| ||||||||||| || | | | ||||||||||||||||    
T  44895192 ttccttttatgttagctttgaatttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 8 - 184
Target Start/End: Complemental strand, 39371314 - 39371138
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||||| ||||||||| |||||| ||  || ||  |||||| ||||||||||||  ||||||||||||||  |||||| ||||| | |||    
T  39371314 gcaaaaagctccaaaagttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactat 39371215  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtgag 184  Q
    ||||||||||||| ||||| | |||| | |||||||||||||||||       |||||||  |||||||||||||||    
T  39371214 tttctttcatgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgag 39371138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 39478282 - 39478420
Alignment:
Q  11 aaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatttt 110  Q
    |||| ||||||||||||| |||| || ||| ||  |||||  |||||||||||||||||||| |||||| ||||||| ||| ||||||||||||||||||    
T  39478282 aaaaactccaaaacttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtatttt 39478381  T
Q  111 ctttcatgttagcttttaaatcacgcgctagcttcaatg 149  Q
    || | |||| |||||| |||||| | |||||||||||||    
T  39478382 ctctgatgtaagctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 39413014 - 39413159
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||| | ||||||||| || ||| ||  || ||  ||| ||| ||||||||||| |||||||| |||||| |||||||| ||||| ||||    
T  39413014 gcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtat 39413113  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    ||||||||| ||||||||| |||||| | |||||||||||||||||    
T  39413114 tttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 39153256 - 39153111
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||| ||||||||||  || ||| ||  || ||  |||||||| ||||||| ||| ||||||||||||||  ||||||||||||||||||    
T  39153256 gcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtat 39153157  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    ||||||| || |||||||| |||||| | || || |||||||||||    
T  39153156 tttcttttattttagctttcaaatcatgtgcgagtttcaatgcttc 39153111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 39380479 - 39380624
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||||| ||||||||| || ||| ||  |||||  |||||||||||||||||||| ||||| |||||||| |||| ||||| ||||||||    
T  39380479 gcaaaaagctccaaaatttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtat 39380578  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    | ||| | |||| |||||| |||||| | |||||| ||| ||||||    
T  39380579 tctctcttatgtaagctttcaaatcaagtgctagcgtcagtgcttc 39380624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 153
Target Start/End: Complemental strand, 39138837 - 39138698
Alignment:
Q  11 aaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatttt 110  Q
    ||||||||||| ||||||||||| |||||||||  |||||   |||||| |||||||| ||| |||||||| |||||  ||| |||||||||||||||      
T  39138837 aaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt-- 39138740  T
Q  111 ctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
     ||||||||||||||| | || | | |||||||||||||||||    
T  39138739 -tttcatgttagctttcagattaagtgctagcttcaatgcttc 39138698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 53 - 146
Target Start/End: Original strand, 39188784 - 39188877
Alignment:
Q  53 ccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttca 146  Q
    ||||||||||| | ||| || ||||||||||||||  ||||||||||| || ||||||||||||||||||||||||||||| | ||||| ||||    
T  39188784 ccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttttaaatcaagtgctagtttca 39188877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 44615591 - 44615461
Alignment:
Q  23 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 122  Q
    ||||||||||| ||||| |||| || ||  || ||||| || |||| ||  ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
T  44615591 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 44615492  T
Q  123 cttttaaatcacgcgctagcttcaatgcttc 153  Q
    |||| || |||| |||||||||||| |||||    
T  44615491 ctttcaactcacacgctagcttcaacgcttc 44615461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 39421219 - 39421344
Alignment:
Q  56 taaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnn 155  Q
    ||||||||||||||||| |||||||| |||||   ||||  ||||||||||||||||| ||| |||||||| |||||| | || ||||||||||||||      
T  39421219 taaattgacaaaagcagtagaaaaccgagaac---caaattattttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttctt 39421315  T
Q  156 nnnnnacacaagtttcaatatttggtgag 184  Q
         |||||||||| ||||| |||||||    
T  39421316 cttttacacaagttttaatatgtggtgag 39421344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 39425521 - 39425663
Alignment:
Q  11 aaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatttt 110  Q
    ||||||| ||||||||| |||||||| ||| ||  || ||| ||||||||||||| ||| || |||||||||||||| |||   ||||||||| | ||||    
T  39425521 aaaagcttcaaaacttcttcttcgtcgaaagaaggaaccagtccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttcattgtttt 39425620  T
Q  111 ctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
       | ||||||||||| |||||| | |||| ||||| ||||||    
T  39425621 gacttatgttagctttcaaatcaagtgctaacttcattgcttc 39425663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 31606537 - 31606608
Alignment:
Q  53 ccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagct 124  Q
    ||||||||||||  ||| || ||||||||||||||  |||||||||||  | ||||||||||||||||||||    
T  31606537 ccataaattgacggaaggagtagaaaaccaagaaccaccaaagaatttctattattttctttcatgttagct 31606608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 39099737 - 39099681
Alignment:
Q  55 ataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttc 111  Q
    ||||||||||| ||| || |||||||||||||| ||||  |||||||||||| ||||    
T  39099737 ataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagtttc 39099681  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 39604468 - 39604368
Alignment:
Q  53 ccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgctt 152  Q
    ||||||||||||| ||| || |||||||| ||||| ||||   ||||||| ||||||||  | ||||||| ||| |||| | | |||||||||| |||||    
T  39604468 ccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtattttcacttatgttagatttcaaattaagtgctagcttcattgctt 39604369  T
Q  153 c 153  Q
    |    
T  39604368 c 39604368  T

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Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 33562486 - 33562302
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||||||||||||||||||||| |||||| |||||||||    ||||||||||||||||| ||||||||||||||| |||||| ||  ||||||||    
T  33562486 gcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtat 33562387  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtgaggttctcat 192  Q
    ||||||||||||||||||| ||||||   |||||||||||||||||       ||||||| |||||||| ||||||| |||||||    
T  33562386 tttctttcatgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcat 33562302  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 17060843 - 17060668
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    |||||||| ||||| ||||||||||  |||||||||  || ||  |||||||  ||||| | || |||||| || |||||  |||| |||| ||||||||    
T  17060843 gcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaatattcagtat 17060744  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgcttcnnnnnnnacacaagtttcaatatttggtga 183  Q
    || |||| ||||||||||| || ||| | ||||||||||| |||||       ||||||| || ||||||||||||    
T  17060743 ttgcttttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtga 17060668  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 19809094 - 19808959
Alignment:
Q  11 aaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatttt 110  Q
    ||||||||||| ||||||||||| |||||||||  |||||   |||||| |||||||||||| ||||||||||||||  ||| ||||||||||||| |      
T  19809094 aaaagctccaagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact-- 19808997  T
Q  111 ctttcatgttagcttttaaatcacgcgctagcttcaatg 149  Q
     ||||||||||||||| |||||| | |||||||||||||    
T  19808996 -tttcatgttagctttcaaatcaagtgctagcttcaatg 19808959  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 153
Target Start/End: Complemental strand, 45343161 - 45343017
Alignment:
Q  9 caaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtatt 108  Q
    ||||||||||||| ||||||||||  |||||| ||  |||||   ||| ||||||||||| ||| |||||||||||||||  ||| || |||||||||||    
T  45343161 caaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgatttttcagtatt 45343062  T
Q  109 ttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    | |||||| ||||||||| || ||| | |||||||| ||||||||    
T  45343061 tcctttcacgttagctttcaactcaagtgctagcttgaatgcttc 45343017  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 44730227 - 44730167
Alignment:
Q  93 aagaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 153  Q
    |||||||||||||||||||||| ||||||||||| || ||| | ||||||||||| |||||    
T  44730227 aagaattttcagtattttcttttatgttagctttcaactcatgtgctagcttcaaagcttc 44730167  T

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Target: chr6 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 152
Target Start/End: Complemental strand, 16114564 - 16114420
Alignment:
Q  8 gcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtat 107  Q
    ||||||||||||||||||||   ||  || ||||||   ||||  ||||||| |||||||||||||| |||||||| ||| ||| | ||||||| |||||    
T  16114564 gcaaaaagctccaaaacttcgcatttatcgaaataagttagcaatccataaactgacaaaagcagcataaaaccaacaacagccgatgaatttttagtat 16114465  T
Q  108 tttctttcatgttagcttttaaatcacgcgctagcttcaatgctt 152  Q
    | ||| |||||| |||||| ||||| |||||||||||||||||||    
T  16114464 tctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 51576171 - 51576079
Alignment:
Q  19 caaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttc 111  Q
    ||||| ||||||||  |||||||||  || ||  ||||||||||||| ||| |||||| ||||||||||  |||  |||||||||||||||||    
T  51576171 caaaatttcatctttatcaaaataaggaaccaatccataaattgacagaaggagcagataaccaagaaccaccacggaattttcagtattttc 51576079  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 33152308 - 33152230
Alignment:
Q  9 caaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaac 87  Q
    |||||||||  |||||||||||||| |||||| |   || || |||||||||||||| ||| ||||||||||| |||||    
T  33152308 caaaaagctttaaaacttcatcttcatcaaaagatgaaaccaacccataaattgacagaagtagcagaaaacccagaac 33152230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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