View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11119_low_5 (Length: 502)
Name: NF11119_low_5
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 33234160 - 33233682
Alignment:
| Q |
11 |
tgagaagggccatgtactgtaatatccaaaccaacttcacttgatggttgaatcattacaatcatagaaagaccaatatctattttataactaaacaaat |
110 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234160 |
tgagaagggccatgcacggtaatatccaaaccaacttcacttgatggttgaatcattacaatcatagaaagaccaatatctattttataactaaacaaat |
33234061 |
T |
|
| Q |
111 |
ttctaatactaacagcataatagtgtgctacagttaccttgcaaggcttttcagcatttccactctttctcatttcttccaacacaagaaaacctcttct |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33234060 |
ttctaatactaacagcataatagtgtgctacagttaccttgcaaggcttttcagcatttccactctttctcatttcttccaacacaagaaaacctcttct |
33233961 |
T |
|
| Q |
211 |
gcttccactcccataaagataaacacatgtttccataacataacccgatgcattagtagtgctgttcctcctttgcttacaattcttaaatcctccattc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
33233960 |
gcttccactcccataaagataaacacatgtttccataacataacccgatgcattagtagtgctgttactcctttgcttacaatttttaaatcctccattt |
33233861 |
T |
|
| Q |
311 |
aataagaggggaggtgtagttgaaccaagaaagcttgtgtctctacttactgcaaaccaaatattgctgtctgaatacatatcgtcaccgatttggaagg |
410 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| || |||||||||||||||| |
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| T |
33233860 |
aacaagaggggaggtgtagtggaaccaagaaagcttgtgtctttacttattgcaaaccaaatattgccatctgaatacatttcatcaccgatttggaagg |
33233761 |
T |
|
| Q |
411 |
atatgctattaactttgccatctttgcttgatactcgtctaagatcgagtatacattttgaactatctattgtgtatga |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33233760 |
atatgctattaactttgccatctttgcttgatactcgtctaagatcgagtatacattttgagctatctattgtgtatga |
33233682 |
T |
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