View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11119_low_8 (Length: 462)
Name: NF11119_low_8
Description: NF11119
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11119_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 20 - 346
Target Start/End: Complemental strand, 41223205 - 41222885
Alignment:
| Q |
20 |
aaaatactcagagggagagatttgatccctttgtgatcctatccggttcgagtaattagtctctgcagtcgtgcgcagaggcaggatattgattcacatt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
41223205 |
aaaatactcagagggagagatttgatcc-tttgtgatcctatccggttcgaggaattagtctctgcagtcgtgcgcaaaggctggatactgattcacatt |
41223107 |
T |
|
| Q |
120 |
aaaaaggagttcaattcaattcaatagaatttttcgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctcaga |
219 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41223106 |
aaaaaggagttcaattcaat-----agaattttttgattctatgtcttcggaactatattcattcggcaccacaactttccacacacattcaacctcaga |
41223012 |
T |
|
| Q |
220 |
aatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaacttct |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41223011 |
aatagtctcttcaaatgatggaagtggagaccttccatttttctcagactctttcccttttttcaccaattctcatcacagtactaatgaagtaacttct |
41222912 |
T |
|
| Q |
320 |
caacaaaattcaaacccatttgatgaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
41222911 |
caacaaaattcaaacccatttgatgaa |
41222885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 402 - 458
Target Start/End: Complemental strand, 41222829 - 41222773
Alignment:
| Q |
402 |
caactgatcaaaaccacactacagtgcagcctctttgtaatgaaagtttctctgctt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41222829 |
caactgatcaaaaccacactacagtgcagcctctttgtaatgaaagtttctcagctt |
41222773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University