View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_107 (Length: 317)
Name: NF1111_high_107
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_107 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 194 - 305
Target Start/End: Original strand, 34617979 - 34618090
Alignment:
| Q |
194 |
ctcgggtgggccaccgaaataagtaataataataattacagttttgtttgcaaatgacaacatgggatgatcaggtagaagatgcagtcaatagaaaagt |
293 |
Q |
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| T |
34617979 |
ctcgggtgggccaccaaaataagtaataataataattacagttttatttgcaaaggacagcatgggatgatcaagtacaagatgcagtcaatagaaaagt |
34618078 |
T |
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| Q |
294 |
agcagcaatatt |
305 |
Q |
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|||||||||||| |
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| T |
34618079 |
agcagcaatatt |
34618090 |
T |
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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 178
Target Start/End: Original strand, 34617887 - 34617934
Alignment:
| Q |
131 |
ctctatctaatctctacttcttcaagcttctttgcctcctgaacacat |
178 |
Q |
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| T |
34617887 |
ctctatctaatctctacttcttcaagcttctttgcctcctgaacacat |
34617934 |
T |
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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 34709995 - 34709907
Alignment:
| Q |
217 |
taataataataattacagttttgtttgcaaatgacaacatgggatgatcaggtagaagatgcagtcaatagaaaagtagcagcaatatt |
305 |
Q |
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| T |
34709995 |
taataataataattacaattttgtttgcaaacgacgacatgggatgatcaagtacaagatgcagtcaatagaaaagtagctgcaatatt |
34709907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 194 - 305
Target Start/End: Complemental strand, 26764828 - 26764721
Alignment:
| Q |
194 |
ctcgggtgggccaccgaaataagtaataataataattacagttttgtttgcaaatgacaacatgggatgatcaggtagaagatgcagtcaatagaaaagt |
293 |
Q |
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| T |
26764828 |
ctcgggtgggccgccaaaattagtaataa---taattacaattttgtttgcaaacgacaatatgggatgatcaagta-catatgcagtcaatagaaaagt |
26764733 |
T |
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| Q |
294 |
agcagcaatatt |
305 |
Q |
| |
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|||| ||||||| |
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| T |
26764732 |
agcaacaatatt |
26764721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 47667281 - 47667366
Alignment:
| Q |
220 |
taataataattacagttttgtttgcaaatgacaacatgggatgatcaggtagaagatgcagtcaatagaaaagtagcagcaatatt |
305 |
Q |
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|||||||||||||||||||| ||||||| ||| |||| | ||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
47667281 |
taataataattacagttttgcttgcaaacgacgacatagaatgatcaattacaagatgcagtcaatattaaagtagcagcaatatt |
47667366 |
T |
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