View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_113 (Length: 310)
Name: NF1111_high_113
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_113 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 30 - 310
Target Start/End: Original strand, 56187421 - 56187701
Alignment:
| Q |
30 |
acaagaaccactcaaattcttgaaagtagagaaaaggatcaccacaaacataaaagattggatgcaaatttagcattagacttggnnnnnnngatagcaa |
129 |
Q |
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| T |
56187421 |
acaagaaccactcaaattcttgaaagtagagaaaaggatcaccacagacataaaagattggatgcaaatttagcattagacttggaaaaaaagatagcaa |
56187520 |
T |
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| Q |
130 |
taagaggaagagacattgaagagacagagtcagaaagggtgagaggagtcaaagatgaaagtagttcgagctacaagttggaagttgttgatcctnnnnn |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56187521 |
taagaggaagagacattgaagagacagagtcagaaagggtgagaggagtcaaagatgaaagtagttcgagctacaagttggaagttgttgatcctaaaaa |
56187620 |
T |
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| Q |
230 |
nntcataagaagggcaagaagtaaatcagaacatagcatgaaaaagggagatagagataaataattattaatctttgaaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
56187621 |
aatcataagaagggcaagaagtaaatcagaacatagcatgaaaaaggcagatagagataaataattattaatctttgaaga |
56187701 |
T |
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