View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_137 (Length: 285)

Name: NF1111_high_137
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_137
NF1111_high_137
[»] chr3 (1 HSPs)
chr3 (1-203)||(28886846-28887067)
[»] chr7 (1 HSPs)
chr7 (110-201)||(32870934-32871025)
[»] chr4 (2 HSPs)
chr4 (110-201)||(7987571-7987661)
chr4 (150-197)||(5929745-5929792)
[»] chr8 (2 HSPs)
chr8 (113-197)||(40050223-40050306)
chr8 (12-71)||(32144572-32144632)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 28887067 - 28886846
Alignment:
Q  1 attttgtagagattttcaggaaaatcaagtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcaccctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28887067 attttgtagagattttcaggaaaatcaagtaatggattatgttagataaataaataatgtccaagggagtttatcatttttacaccattctatcaccctt 28886968  T
Q  101 gtctctcct-------------------ccagcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccat 181  Q
    |||||||||                   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28886967 gtctctcctccatgtccccactcacccgccagcaacatcaatttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccat 28886868  T
Q  182 aaatctatcattcaactgatga 203  Q
    ||||||||||||||||||||||    
T  28886867 aaatctatcattcaactgatga 28886846  T

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Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 32871025 - 32870934
Alignment:
Q  110 ccagcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaactgat 201  Q
    |||||||||| |||||||||||||||| | |||||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  32871025 ccagcaacatgaacttcaccaccagcaccgccctcccaaacctcacaactttatcccccttattacatccataaatatattattcaactgat 32870934  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 201
Target Start/End: Original strand, 7987571 - 7987661
Alignment:
Q  110 ccagcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaactgat 201  Q
    |||||||||| |||||||||| ||||| | |||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||    
T  7987571 ccagcaacatgaacttcaccatcagcaccgccctcccaaacctcacaactt-atcccccttattacatccataaatctattattcaactgat 7987661  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 5929792 - 5929745
Alignment:
Q  150 cctcacaactttatcccccttattgcatccataaatctatcattcaac 197  Q
    ||||||||| ||| |||| ||||||||||||||||||||| |||||||    
T  5929792 cctcacaaccttaccccctttattgcatccataaatctattattcaac 5929745  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 40050306 - 40050223
Alignment:
Q  113 gcaacatcaacttcaccaccagcatcaccctccaaaacctcacaactttatcccccttattgcatccataaatctatcattcaac 197  Q
    ||||||||||||||||||| |||| | |||||| | |||||| ||| ||| | |  ||||||||||||||||||||| |||||||    
T  40050306 gcaacatcaacttcaccac-agcaccgccctcctatacctcagaaccttacctcttttattgcatccataaatctattattcaac 40050223  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 71
Target Start/End: Original strand, 32144572 - 32144632
Alignment:
Q  12 attttcaggaaaa-tcaagtaatggattatgttagataaataaataatgtccaagggagtt 71  Q
    ||||||||||||| ||||||| |||||||||| | ||||||||||| |||| | |||||||    
T  32144572 attttcaggaaaaatcaagtattggattatgtcatataaataaatattgtcaatgggagtt 32144632  T

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