View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_14 (Length: 515)
Name: NF1111_high_14
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_14 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 25900070 - 25899552
Alignment:
| Q |
1 |
aaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25900070 |
aaaaaatcatctatgtctctcacttgcacaacttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaat |
25899971 |
T |
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| Q |
101 |
aagaatcagaaaggtttatggttaaaaaatcattatcaaatacaa-agcaatgt---acagagaaatttattgaatacattttgcaggtatttgctcgaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25899970 |
aagaatcagaaaggtttatggttaaaaaatcattatcaaatacaagagcaatgtctcagagagaaatttattgaatacattttgcaggtatttgctcgaa |
25899871 |
T |
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| Q |
197 |
tgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtattttggcgcaatgcatgcttgaagggttg |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25899870 |
tgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctgtactttggcgcaatgcatgcttgaagggttg |
25899771 |
T |
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| Q |
297 |
gcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagcctttttatgaagctctctggagcggttg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
25899770 |
gcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacggagccttcttatgaagctctctgaagcggttg |
25899671 |
T |
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| Q |
397 |
aaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggttgcgatttgacggtaagcacagctatctctt |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |
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| T |
25899670 |
aaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttacggccaaggttgcgatttgatggtaagcacaactatctctt |
25899571 |
T |
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| Q |
497 |
atttcatagccttatttcc |
515 |
Q |
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||| ||||||||||||||| |
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| T |
25899570 |
attgcatagccttatttcc |
25899552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 166 - 515
Target Start/End: Original strand, 40068361 - 40068710
Alignment:
| Q |
166 |
attgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaattcgtaaccctg |
265 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| || || || || ||||||||||||| ||||| |||||||||| |
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| T |
40068361 |
attgaaaacattttgcaggtctttgctcgaatgactccatatgatatgggaaaagcatcgtgcgtatgtcgaaaatggcggtacacaatccgtaaccctg |
40068460 |
T |
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| Q |
266 |
tattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggttttgaatatggatcttctactgcttataagtctaatttctgactacgg |
365 |
Q |
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| T |
40068461 |
cattttggcgcaatgcatgcttgaagggttggcaggtaatgtcattggaggtttagaatatggatcttttactgcttataagtctaatttctgattatgg |
40068560 |
T |
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| Q |
366 |
agcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatgtggctcttatggccaaggt |
465 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
40068561 |
agcctttttatgaagctctctggagcggttgaaaactataaaatacttcaatcaaaatacgatggctcatggcggaaaatgtggctcttacggccaaggt |
40068660 |
T |
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| Q |
466 |
tgcgatttgacggtaagcacagctatctcttatttcatagccttatttcc |
515 |
Q |
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| T |
40068661 |
tgcgatttgatggtaagcacagctatctcttatttcataaccttatttcc |
40068710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 40068163 - 40068242
Alignment:
| Q |
32 |
cttattgatggtatttggtgcattatcgttgattctaacggctttgagaacagaaactgttcttaaaataagaatcagaa |
111 |
Q |
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|||||||| ||||||||||| |||| |||| ||| ||| ||||||||||||||||||||||| || ||| ||| ||||| |
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| T |
40068163 |
cttattgactgtatttggtgctttattgttggttccaacagctttgagaacagaaactgttctcaacataggaaccagaa |
40068242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 156 - 446
Target Start/End: Original strand, 41099456 - 41099749
Alignment:
| Q |
156 |
agagaaatttattgaatacattttgcaggtatttgctcgaatgactccatatgatatgggaaaagcctcttgtgtgagttgaaaatggcggtatacaatt |
255 |
Q |
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||||| |||||||||||||| |||||| ||||||||| ||||||||||||||||| || |||||||||||||||| | | ||||||| |||||| |||| |
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| T |
41099456 |
agagagatttattgaatacactttgcaagtatttgctagaatgactccatatgatgaggaaaaagcctcttgtgtgtg-tcaaaatggtggtataaaatt |
41099554 |
T |
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| Q |
256 |
cgtaaccctgtattttggcgcaatgcatgcttgaagggttggcaggtaatgtca--ttggaggttttgaatatggatcttctactgcttataagtc--ta |
351 |
Q |
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| ||| |||||||||| | | ||||||||||||||||||||||| || | |||| |||| |||||||| || || ||| ||||||||||||||| || |
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| T |
41099555 |
cataagcctgtattttcgtggaatgcatgcttgaagggttggcaagtgaggtcaatatggacgttttgaaaatagaacttttactgcttataagtctata |
41099654 |
T |
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| Q |
352 |
atttctgactacggagcctttttatgaagctctctggagcggttgaaaactataagatacttcaatcaaaatacgacggctcatggcggaaaatg |
446 |
Q |
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|| ||| | || |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||||||||| || |||| |||| ||||||| |
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| T |
41099655 |
atatcttattatggagccttttcatgaagcactctagagtggttgaaaactataagatacttcaatcaaaatatgatggctagtggcagaaaatg |
41099749 |
T |
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