View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_140 (Length: 281)
Name: NF1111_high_140
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_140 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 268
Target Start/End: Complemental strand, 35177696 - 35177435
Alignment:
| Q |
7 |
gcatagaatatttattttttaatactgaattagagttactaaccagaagctttcctgtacaatttacataagtttttcaggtcactcttgagtgctttca |
106 |
Q |
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| T |
35177696 |
gcatagaatatttattttttaatactgaattagagttactaaccagaagctttcctgtacaatttacgtaagtttttcaggtcactcttgagtgctttca |
35177597 |
T |
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| Q |
107 |
caaaaatcatgatgttatctacatacagaacagaacatgtctaagaggagtattgattcctgttagcctatcacagaacatatctaggaggagtattgat |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
35177596 |
caaaaatcatgatgttatctacatacggaacagaacatgtctaagaggagtattgattcctgttagcctatcgcagaacatatctaggaggagtattgat |
35177497 |
T |
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| Q |
207 |
tcctgttagacataggctgcaactcacttgtgtagttgtgttcatttaaagtagaatgcttc |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
35177496 |
tcctgttagacataggctgcaactcacttgtgtagttgtgttcatttaaaggagaatgcttc |
35177435 |
T |
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