View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_156 (Length: 257)

Name: NF1111_high_156
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_156
NF1111_high_156
[»] chr3 (8 HSPs)
chr3 (1-247)||(27105369-27105615)
chr3 (1-247)||(27098370-27098616)
chr3 (1-228)||(27056539-27056765)
chr3 (129-225)||(27041354-27041450)
chr3 (65-229)||(27085768-27085932)
chr3 (1-224)||(27069648-27069871)
chr3 (1-196)||(27045639-27045834)
chr3 (150-229)||(27062730-27062809)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27105369 - 27105615
Alignment:
Q  1 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105369 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 27105468  T
Q  101 tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg 200  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105469 tccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg 27105568  T
Q  201 caattgattcaaaagttgtgaaccttatacctccactttccttcatc 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27105569 caattgattcaaaagttgtgaaccttatacctccactttccttcatc 27105615  T

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Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 27098370 - 27098616
Alignment:
Q  1 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27098370 aatttcatagagtggcctttcatcgagctcactaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggatcaaaa 27098469  T
Q  101 tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg 200  Q
    |||||||| |||||||||||||| | |||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27098470 tccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagttttaaggctcttgctcttgatctccaaacataacctg 27098569  T
Q  201 caattgattcaaaagttgtgaaccttatacctccactttccttcatc 247  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||    
T  27098570 caattgattcaaaagttgtgaaccttatatttccactttccttcatc 27098616  T

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Target: chr3; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27056539 - 27056765
Alignment:
Q  1 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 100  Q
    |||||||||||||||| |||| | |||||| || |||||||| |||   ||| |||| | |   ||||| ||||| || || ||||||||||  ||| ||    
T  27056539 aatttcatagagtggcatttcgttgagctcactcacttttaaaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataa 27056638  T
Q  101 tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg 200  Q
    |||| ||| |||||||||||||||  | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||    
T  27056639 tcctccaagttgcgtctaataccaactgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacataacctg 27056738  T
Q  201 caattgattcaaaagttgtgaaccttat 228  Q
    ||| | | ||||||||||||||||||||    
T  27056739 caagt-actcaaaagttgtgaaccttat 27056765  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 129 - 225
Target Start/End: Original strand, 27041354 - 27041450
Alignment:
Q  129 caatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaacct 225  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||    
T  27041354 caatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacct 27041450  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 27085768 - 27085932
Alignment:
Q  65 gaattcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagtt 164  Q
    |||||||||||||| || ||||||||||  ||| ||||||| || ||||||||| |||||  | ||||||| | | |||||  ||||||| | |||||||    
T  27085768 gaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagtt 27085867  T
Q  165 ttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttata 229  Q
    ||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||    
T  27085868 ttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttata 27085932  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27069648 - 27069871
Alignment:
Q  1 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 100  Q
    |||||||||||||||| ||||||||||||| || |||||||| |||   |||||||| |     |||||||| ||||| || || |||||||  ||||||    
T  27069648 aatttcatagagtggcatttcatcgagctcactcacttttaaaacaacttttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaa 27069747  T
Q  101 tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg 200  Q
    ||| |||| || ||||| ||||||  ||  ||  ||| || ||||| | ||||| || |||| |||||||||||||||||||| ||||||||||||||||    
T  27069748 tccatcaagttacgtctcataccaactaacatattcagcattgttttatcattgctgctaagctttaaggctcttgctcttgacctccacacataacctg 27069847  T
Q  201 caattgattcaaaagttgtgaacc 224  Q
    |||    |||||||||||| ||||    
T  27069848 caagaacttcaaaagttgtaaacc 27069871  T

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Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27045639 - 27045834
Alignment:
Q  1 aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa 100  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||   ||| |||| |||   | ||| |||||||| ||  |||| ||||| ||| ||    
T  27045639 aatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataa 27045738  T
Q  101 tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataa 196  Q
     | ||||   ||||||||||||||  ||  ||  |||||| |||||  ||||||||| |||||| |||||||||||||||||| ||||||||||||    
T  27045739 cctttcatgctgcgtctaataccaactaacatattcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa 27045834  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 150 - 229
Target Start/End: Original strand, 27062730 - 27062809
Alignment:
Q  150 cattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttata 229  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||||||    
T  27062730 cattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttata 27062809  T

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