View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_160 (Length: 254)

Name: NF1111_high_160
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_160
NF1111_high_160
[»] chr8 (7 HSPs)
chr8 (6-254)||(8605207-8605455)
chr8 (21-166)||(8575116-8575261)
chr8 (180-234)||(9596151-9596205)
chr8 (207-254)||(21653633-21653680)
chr8 (191-240)||(38287890-38287939)
chr8 (206-254)||(21653471-21653519)
chr8 (180-246)||(17607360-17607423)
[»] chr7 (7 HSPs)
chr7 (180-254)||(37756078-37756151)
chr7 (191-254)||(36270609-36270672)
chr7 (203-240)||(30296454-30296491)
chr7 (180-254)||(47346234-47346309)
chr7 (180-246)||(36495784-36495847)
chr7 (210-254)||(40121846-40121890)
chr7 (206-237)||(36092527-36092558)
[»] chr4 (8 HSPs)
chr4 (180-254)||(52810764-52810838)
chr4 (206-254)||(50858156-50858204)
chr4 (203-254)||(29669590-29669641)
chr4 (193-254)||(37288777-37288838)
chr4 (191-254)||(46529062-46529122)
chr4 (206-254)||(45427164-45427212)
chr4 (208-254)||(53740012-53740058)
chr4 (206-254)||(990867-990915)
[»] chr3 (14 HSPs)
chr3 (180-254)||(9180259-9180333)
chr3 (180-254)||(22666456-22666530)
chr3 (180-254)||(48511552-48511625)
chr3 (180-246)||(16051455-16051521)
chr3 (180-254)||(9179247-9179321)
chr3 (180-246)||(16060805-16060871)
chr3 (206-254)||(50056983-50057031)
chr3 (199-246)||(16045292-16045339)
chr3 (180-246)||(9179025-9179091)
chr3 (180-254)||(16033212-16033286)
chr3 (207-240)||(10453855-10453888)
chr3 (203-240)||(14170241-14170278)
chr3 (209-254)||(44573473-44573518)
chr3 (206-254)||(2799955-2800003)
[»] chr2 (12 HSPs)
chr2 (180-254)||(936930-937003)
chr2 (180-254)||(10862197-10862271)
chr2 (180-247)||(32197026-32197093)
chr2 (206-254)||(3976915-3976963)
chr2 (180-254)||(10861973-10862044)
chr2 (206-254)||(21214113-21214161)
chr2 (207-254)||(14289065-14289112)
chr2 (182-254)||(11350327-11350395)
chr2 (206-239)||(3976712-3976745)
chr2 (180-251)||(11349936-11350003)
chr2 (206-254)||(3976383-3976431)
chr2 (180-254)||(28193490-28193561)
[»] chr5 (9 HSPs)
chr5 (206-254)||(13843841-13843889)
chr5 (209-254)||(18541870-18541915)
chr5 (180-254)||(83950-84020)
chr5 (206-254)||(27760219-27760267)
chr5 (206-254)||(1028320-1028368)
chr5 (180-237)||(946782-946836)
chr5 (191-239)||(30329965-30330010)
chr5 (191-240)||(22196479-22196528)
chr5 (191-254)||(33040374-33040434)
[»] chr6 (7 HSPs)
chr6 (203-254)||(8143843-8143894)
chr6 (203-253)||(21089077-21089127)
chr6 (203-253)||(21067286-21067336)
chr6 (180-254)||(25184121-25184191)
chr6 (206-254)||(28068331-28068379)
chr6 (206-254)||(13673999-13674047)
chr6 (180-232)||(33396425-33396476)
[»] chr1 (6 HSPs)
chr1 (180-254)||(29228566-29228639)
chr1 (180-254)||(45858773-45858844)
chr1 (180-254)||(27957959-27958033)
chr1 (174-252)||(17294755-17294829)
chr1 (180-254)||(30604600-30604673)
chr1 (213-254)||(20735673-20735714)


Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 6 - 254
Target Start/End: Original strand, 8605207 - 8605455
Alignment:
Q  6 acttctatcatttacaggaggcaaaagggacagatccatcaccagcagagtcttatttccatactcatcgaaaaaaggatcaacgttgggttggtccttg 105  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8605207 acttttatcatttacaggaggcaaaagggacagatccatcaccggcagagtcttatttccatactcatcgaaaaaaggatcaatgttgggttggtccttg 8605306  T
Q  106 ttcatagtctgcttatgtgagtcccatctgttttttaccatagactaatttggttttttctctaataataacactggtatcaggacctatcgggtccatt 205  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8605307 ttcatagtctgcttatgtaagtcccatctgttttttaacatagactaatttggttttttctctaataataacactggtatcaggacctatcgggtccatc 8605406  T
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||||||||||||| |||||||||| ||||| |||||||    
T  8605407 gttgggcttcctgcatcgtccacgattcaggcccattgggccgggctga 8605455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 8575116 - 8575261
Alignment:
Q  21 aggaggcaaaagggacagatccatcaccagcagagtcttatttccatactcatcgaaaaaaggatcaacgttgggttggtccttgttcatagtctgctta 120  Q
    ||||||||||||||||||||||||||   |  |||| |||||| | |||||| ||||||||||||||| ||||||| ||||||  | || ||||||||||    
T  8575116 aggaggcaaaagggacagatccatcattggatgagttttattttcgtactcaccgaaaaaaggatcaaagttgggtgggtcctcttgcagagtctgctta 8575215  T
Q  121 tgtgagtcccatctgttttttaccatagactaatttggttttttct 166  Q
    ||| |||| |||||||||| || |||| ||  ||||| ||||||||    
T  8575216 tgtaagtctcatctgttttctaacataaacatatttgattttttct 8575261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 234
Target Start/End: Complemental strand, 9596205 - 9596151
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttca 234  Q
    |||||||||  | ||||||||| ||||||||||||||||||||||||||||||||    
T  9596205 tggtatcagagcttatcgggtctattgttgggcttcctgcatcgtccacgcttca 9596151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 21653633 - 21653680
Alignment:
Q  207 ttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  21653633 ttgggcttcctgcatcgtccacgcttcaggaccattgggccgggctga 21653680  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 38287939 - 38287890
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggccca 240  Q
    ||||| |||||||| ||||||||| || ||||||||||||||||||||||    
T  38287939 cctattgggtccatcgttgggctttctacatcgtccacgcttcaggccca 38287890  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 21653471 - 21653519
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| |||||||    
T  21653471 gttgggcttcccgcatcgtccacgcttcaggaccattgggccgggctga 21653519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 17607423 - 17607360
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    |||||||||  ||||||||||| |||||||||||   |||||| ||||||||| ||||||| |||||    
T  17607423 tggtatcagagcctatcgggtcaattgttgggct---tgcatcatccacgctttaggcccaatgggc 17607360  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 37756151 - 37756078
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  37756151 tggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattgggccgggctga 37756078  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 36270672 - 36270609
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||||| ||||| |||||||    
T  36270672 cctatcgggtccatcgttgggcttcaagcatcgtccacgcttcaggcccattgggccgggctga 36270609  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 30296454 - 30296491
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggccca 240  Q
    |||||||||||||| |||||||||||||||||||||||    
T  30296454 attgttgggcttcccgcatcgtccacgcttcaggccca 30296491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 47346309 - 47346234
Alignment:
Q  180 tggtatcaggacctatcgggtccatt--gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  ||||||||||||||   ||||||||||||||||| ||||||||||||||||| ||| | |||||||    
T  47346309 tggtatcagagcctatcgggtccatgtcgttgggcttcctgcatc-tccacgcttcaggcccattggaccgggctga 47346234  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 36495784 - 36495847
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    |||||||||  |||||||||||||| ||||||||   ||||||||||| |||||||||||| |||||    
T  36495784 tggtatcagagcctatcgggtccatcgttgggct---tgcatcgtccatgcttcaggcccattgggc 36495847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 40121890 - 40121846
Alignment:
Q  210 ggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||| ||||||||||||||||||||||| ||||| |||||||    
T  40121890 ggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 40121846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 237
Target Start/End: Complemental strand, 36092558 - 36092527
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggc 237  Q
    ||||||||||||||||||||||||||||||||    
T  36092558 gttgggcttcctgcatcgtccacgcttcaggc 36092527  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 52810838 - 52810764
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||||||||||  |||||||||||||||||||||| ||||| |||||||    
T  52810838 tggtatcagagcctatcgggtccatcgttgggcttccgacatcgtccacgcttcaggcccattgggccgggctga 52810764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 50858156 - 50858204
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  50858156 gttgggcttcctgcatcgtccacgcttcaggcccattgggccgggctga 50858204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 254
Target Start/End: Complemental strand, 29669641 - 29669590
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  29669641 attgttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 29669590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 37288838 - 37288777
Alignment:
Q  193 tatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||| |||||| || ||||||||| |||||| ||||||||||| |||||||||||||    
T  37288838 tatcgggtctattgttaggtttcctgcattgtccacacttcaggcccattgggctgggctga 37288777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 46529122 - 46529062
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||| ||||| |||||||    
T  46529122 cctatcgggtccatcgttgggctt---gcatcgtccacgcttcaggcccattgggccgggctga 46529062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 45427212 - 45427164
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  45427212 gttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 45427164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 254
Target Start/End: Original strand, 53740012 - 53740058
Alignment:
Q  208 tgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  53740012 tgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 53740058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 990867 - 990915
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||| |||||| ||||||||||||||||||||||| | ||| |||||||    
T  990867 gttgagcttcccgcatcgtccacgcttcaggcccattaggccgggctga 990915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 9180259 - 9180333
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| ||||||||||| |||||||||||| | |||||||| |||||||||||||    
T  9180259 tggtatcagagcctatcgggtccatcgttgggcttccagcatcgtccacgatccaggcccattgggctgggctga 9180333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 22666530 - 22666456
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||| |||||||||  ||||| |||||||    
T  22666530 tggtatcagaacctatcgggtctatcgttgggcttcctgcatcgtccacgtttcaggcccgttgggccgggctga 22666456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 48511625 - 48511552
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  48511625 tggtatcagagcctatcgggtccatcgttgggcttcctgcatc-tccacgcttcaggcccattgggccgggctga 48511552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 16051521 - 16051455
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    |||||||||  ||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||    
T  16051521 tggtatcagagcctattgggtccatcgttgggcttcctgcatcgtccatgcttcaggcccattgggc 16051455  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 9179247 - 9179321
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||||||||| ||||| |||||||| ||| |||| ||||| ||||| |||||||    
T  9179247 tggtatcagagcctatcgggtccattgttggtcttccagcatcgtcgacgattcaagcccattgggcggggctga 9179321  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 16060871 - 16060805
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    |||||||||  ||||| ||||||||  ||||||||| |||||||||||||||||||||||| |||||    
T  16060871 tggtatcagagcctattgggtccatctttgggcttcttgcatcgtccacgcttcaggcccattgggc 16060805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 50056983 - 50057031
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  50056983 gttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 50057031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 16045339 - 16045292
Alignment:
Q  199 gtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    |||||| |||||||||| |||||||||||||||||||||||| |||||    
T  16045339 gtccatcgttgggcttcttgcatcgtccacgcttcaggcccattgggc 16045292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 9179025 - 9179091
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggc 246  Q
    ||||||||| |||||||||||||||    |||||||||||||| ||||||||| ||||||| |||||    
T  9179025 tggtatcagaacctatcgggtccatcaccgggcttcctgcatcatccacgctttaggcccattgggc 9179091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 16033286 - 16033212
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||  ||||||| | |||||||||||||| |||||||||||||||||| ||| | |||||||    
T  16033286 tggtatcagagcctattaggtccatcgctgggcttcctgcattgtccacgcttcaggcccattggaccgggctga 16033212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 240
Target Start/End: Complemental strand, 10453888 - 10453855
Alignment:
Q  207 ttgggcttcctgcatcgtccacgcttcaggccca 240  Q
    ||||||||||||||||||||||||||| ||||||    
T  10453888 ttgggcttcctgcatcgtccacgcttctggccca 10453855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 14170278 - 14170241
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggccca 240  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  14170278 attgttggacttcccgcatcgtccacgcttcaggccca 14170241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 44573473 - 44573518
Alignment:
Q  209 gggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||  |||||||||||||||||||||| ||||| |||||||    
T  44573473 gggcttcccacatcgtccacgcttcaggcccattgggccgggctga 44573518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 2800003 - 2799955
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||||||||| |||| || ||||||||| ||||| |||||||    
T  2800003 gttgggcttcctgcatcatccatgcatcaggcccattgggccgggctga 2799955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 936930 - 937003
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||||||||||| |||| ||||||||||||||||| ||||| |||||||    
T  936930 tggtatcagagcctatcgggtccatcgttgggcttcctacatc-tccacgcttcaggcccattgggccgggctga 937003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 10862197 - 10862271
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||| |||||||||||||| |||||||| |||||| ||||| |||||||    
T  10862197 tggtatcagagcctatcgggtccatcgttgagcttcctgcatcgttcacgcttctggcccattgggccgggctga 10862271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 32197026 - 32197093
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggct 247  Q
    |||||||||  ||| |||||||||| ||||||||||||||||| |||| |||||||||||| ||||||    
T  32197026 tggtatcagaccctgtcgggtccatcgttgggcttcctgcatcatccatgcttcaggcccattgggct 32197093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 3976963 - 3976915
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||||| |||||||||||||||||| ||||| |||||||    
T  3976963 gttgggcttcctgcattgtccacgcttcaggcccattgggccgggctga 3976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 10862044 - 10861973
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||||||||   ||||||||||||||||||||||| ||||  |||||||    
T  10862044 tggtatcagagcctatcgggtccatcgttgggctt---gcatcgtccacgcttcaggcccattgggtcgggctga 10861973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 21214161 - 21214113
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  21214161 gttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 21214113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 254
Target Start/End: Original strand, 14289065 - 14289112
Alignment:
Q  207 ttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  14289065 ttgggcttcctacatcgtccacgcttcaggcccattgggccgggctga 14289112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 11350395 - 11350327
Alignment:
Q  182 gtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||  ||||| |||||||| |||||||||   ||||| ||||||||||||||||| |||||||||||||    
T  11350395 gtatcagagcctattgggtccatcgttgggctt---gcatc-tccacgcttcaggcccattgggctgggctga 11350327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 3976745 - 3976712
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggccc 239  Q
    ||||||||||| ||||||||||||||||||||||    
T  3976745 gttgggcttcccgcatcgtccacgcttcaggccc 3976712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 180 - 251
Target Start/End: Complemental strand, 11350003 - 11349936
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggc 251  Q
    |||||||||  ||||| |||||||| |||||||||   ||||| ||||||||||||||||| ||||||||||    
T  11350003 tggtatcagagcctattgggtccatcgttgggctt---gcatc-tccacgcttcaggcccattgggctgggc 11349936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 3976431 - 3976383
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||  |||||||||||||||||||||  ||||| |||||||    
T  3976431 gttgggcttcccacatcgtccacgcttcaggcccgttgggccgggctga 3976383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 28193561 - 28193490
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||| |||| || |||||||||   ||||||||||||||||||||||| ||||  |||||||    
T  28193561 tggtatcagagcctatcaggtctatcgttgggctt---gcatcgtccacgcttcaggcccattgggtcgggctga 28193490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 13843841 - 13843889
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  13843841 gttgggcttcctgcatcgtccacgcttcaggcccattgggccgggctga 13843889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 18541870 - 18541915
Alignment:
Q  209 gggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||    
T  18541870 gggcttcctgcatcgtccacgcttcaggcccattgggccgggctga 18541915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 84020 - 83950
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||||||||   ||||| ||||||||||||||||| |||||||||||||    
T  84020 tggtatcagatcctatcgggtccatcgttgggctt---gcatc-tccacgcttcaggcccattgggctgggctga 83950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 27760219 - 27760267
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  27760219 gttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 27760267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 1028368 - 1028320
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||||| |||||||||||||||||| |||| ||||| |||||||    
T  1028368 gttgggcttcccgcatcgtccacgcttcagacccattgggcagggctga 1028320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 946782 - 946836
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggc 237  Q
    |||||||||  |||||||||||||| ||||||||   |||||||||||||||||||||    
T  946782 tggtatcagagcctatcgggtccatcgttgggct---tgcatcgtccacgcttcaggc 946836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 30329965 - 30330010
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggccc 239  Q
    |||||||||||||| |||||||||   ||||||||||||||||||||||    
T  30329965 cctatcgggtccatcgttgggctt---gcatcgtccacgcttcaggccc 30330010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 22196528 - 22196479
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggccca 240  Q
    ||||| |||||||| |||||||||  |||||||||||| |||||||||||    
T  22196528 cctattgggtccatcgttgggctttttgcatcgtccacacttcaggccca 22196479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 33040374 - 33040434
Alignment:
Q  191 cctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||| ||||| |||||||||   ||||||||||||||||||||||| | ||| |||||||    
T  33040374 cctatcggatccatcgttgggctt---gcatcgtccacgcttcaggcccattcggccgggctga 33040434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 203 - 254
Target Start/End: Original strand, 8143843 - 8143894
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  8143843 attgttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctga 8143894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 21089127 - 21089077
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctg 253  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||||    
T  21089127 attgttgggcttcccgcatcgtccacgcttcaggcccattgggccgggctg 21089077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 21067336 - 21067286
Alignment:
Q  203 attgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctg 253  Q
    ||||||||||||||  |||||||||||||||||||||| ||||| ||||||    
T  21067336 attgttgggcttcccacatcgtccacgcttcaggcccattgggccgggctg 21067286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 25184121 - 25184191
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| ||||||||   |||||| ||||||||||||||||| ||||| |||||||    
T  25184121 tggtatcagagcctatcgggtccatcgttgggct---tgcatc-tccacgcttcaggcccattgggccgggctga 25184191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 254
Target Start/End: Complemental strand, 28068379 - 28068331
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||||  |||||||||||||||||||||| ||||| |||||||    
T  28068379 gttgggcttcccacatcgtccacgcttcaggcccattgggccgggctga 28068331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 13673999 - 13674047
Alignment:
Q  206 gttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    ||||||||| | ||||| ||||||||||||||||| |||| ||||||||    
T  13673999 gttgggctttcggcatcatccacgcttcaggcccattgggttgggctga 13674047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 33396425 - 33396476
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgctt 232  Q
    |||||||||  ||| |||||||||| ||||||||||||||||| |||||||||    
T  33396425 tggtatcagagcctgtcgggtccatcgttgggcttcctgcatc-tccacgctt 33396476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 29228566 - 29228639
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||| ||||||| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||    
T  29228566 tggtatcagagcctatcaggtccatcgttgggcttcctgcatc-tccacacttcaggcccattgggccgggctga 29228639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 45858773 - 45858844
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||||| |||||||||   |||||||||||| |||||||||| ||||| |||||||    
T  45858773 tggtatcagagcctatcgggtccatcgttgggctt---gcatcgtccacgtttcaggcccattgggccgggctga 45858844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 27958033 - 27957959
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||||||||  | ||||||||||| |  |||||||||||||||||||| ||||| |||||||    
T  27958033 tggtatcagagcctatcgggtctgtcgttgggcttccagtgtcgtccacgcttcaggcccattgggccgggctga 27957959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 17294755 - 17294829
Alignment:
Q  174 taacactggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggct 252  Q
    ||||| ||| |||||  |||||||||||||| |||||||||   ||||| ||||||||||||||||| |||||||||||    
T  17294755 taacagtggcatcagagcctatcgggtccatcgttgggctt---gcatc-tccacgcttcaggcccattgggctgggct 17294829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 254
Target Start/End: Complemental strand, 30604673 - 30604600
Alignment:
Q  180 tggtatcaggacctatcgggtccattgttgggcttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||||||||  |||||| |||||||  |||||||||||||||| ||||| ||||||||||| ||| | |||||||    
T  30604673 tggtatcagagcctatctggtccatcattgggcttcctgcatc-tccacacttcaggcccattggaccgggctga 30604600  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 254
Target Start/End: Original strand, 20735673 - 20735714
Alignment:
Q  213 ttcctgcatcgtccacgcttcaggcccactgggctgggctga 254  Q
    |||| ||||||||||||||||||||||| ||||| |||||||    
T  20735673 ttcccgcatcgtccacgcttcaggcccattgggccgggctga 20735714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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