View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_168 (Length: 251)

Name: NF1111_high_168
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_168
NF1111_high_168
[»] chr5 (18 HSPs)
chr5 (30-130)||(39470512-39470611)
chr5 (133-251)||(39487704-39487822)
chr5 (129-251)||(39463369-39463491)
chr5 (129-249)||(39476753-39476873)
chr5 (129-248)||(39452242-39452361)
chr5 (132-251)||(39473269-39473388)
chr5 (129-251)||(39455867-39455989)
chr5 (30-104)||(39464335-39464409)
chr5 (129-251)||(39461492-39461614)
chr5 (129-251)||(39457107-39457229)
chr5 (129-248)||(43311342-43311461)
chr5 (133-202)||(39484553-39484622)
chr5 (30-130)||(39458048-39458148)
chr5 (30-103)||(39486786-39486859)
chr5 (30-100)||(39460568-39460638)
chr5 (30-103)||(39454954-39455027)
chr5 (30-103)||(39472351-39472424)
chr5 (72-103)||(43312315-43312346)


Alignment Details
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 39470611 - 39470512
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga 129  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  39470611 gattgatgttgccaaagaattttccctccctgcgtttgtgttgttcacttccggcattgctttccttggtttg-aatctctatattcaatatctgtttga 39470513  T

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Target: chr5; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 39487822 - 39487704
Alignment:
Q  133 gacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttatccaa 232  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||       |||||||||||||| ||||||||    
T  39487822 gacctaaataagtgtaggaagatccaccctctaacaaagtcttcttactcttttcactcatctctatcacttttttcctgaattctccatccttatccaa 39487723  T
Q  233 cacactccttattcctctc 251  Q
    || | ||||||||||||||    
T  39487722 caaattccttattcctctc 39487704  T

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Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 39463369 - 39463491
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||       || | ||||||||| ||||    
T  39463369 aaacgacctaaataagtgtaggaagatcctccctctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacttctccatccttat 39463468  T
Q  229 ccaacacactccttattcctctc 251  Q
    | |||||||||||||||||||||    
T  39463469 ctaacacactccttattcctctc 39463491  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 129 - 249
Target Start/End: Complemental strand, 39476873 - 39476753
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       || |  ||| |||| ||||    
T  39476873 aaacgacctaaataattgtaagaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcactttcttccttacatctgcatccttat 39476774  T
Q  229 ccaacacactccttattcctc 249  Q
    |||||||||||||||||||||    
T  39476773 ccaacacactccttattcctc 39476753  T

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Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 39452361 - 39452242
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||| ||| ||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||        ||||| |||||||| ||||    
T  39452361 aaacgacttaaataaatggaggaagatcctccttctaacagagtcttcttactcttttcactcatctctttcatttttttcctgaactctccatccttat 39452262  T
Q  229 ccaacacactccttattcct 248  Q
    ||||||||||||||||||||    
T  39452261 ccaacacactccttattcct 39452242  T

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Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 39473388 - 39473269
Alignment:
Q  132 cgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttatcca 231  Q
    |||||||| || | ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||       || |  |||||||| |||||||    
T  39473388 cgacctaaatatgcgtaagaagatccaccttctaacaaagtcttcttacttttttcactcatctctttcactttcttccttacatctccatccttatcca 39473289  T
Q  232 acacactccttattcctctc 251  Q
    ||||||||||||||||||||    
T  39473288 acacactccttattcctctc 39473269  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 39455989 - 39455867
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||||||| |||||| | |||||||| || ||||||||||||||||| |||||||||||||||||||||||       || || |||||||| ||||    
T  39455989 aaacgacctaaataagtggaagaagatcctccctctaacaaagtcttcttgctcttttcactcatctctttcactgttttcctaaactctccatccttat 39455890  T
Q  229 ccaacacactccttattcctctc 251  Q
    |||| ||||||||||||||||||    
T  39455889 ccaatacactccttattcctctc 39455867  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 39464409 - 39464335
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaa 104  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  39464409 gattgatgttgccaaggaattttccgtccctgcgtttgtgttcttcacttcgagtgttgctttccttggtttgaa 39464335  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 39461614 - 39461492
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||||||| | | |||| ||||||||||| ||||||||||| ||| |||||||||||||||||||||||||       ||||  |||||||| || |    
T  39461614 aaacgacctaaatgactgtaagaagatccaccctctaacaaagttttcctactcttttcactcatctctttcactttctttctgacctctccatcctttt 39461515  T
Q  229 ccaacacactccttattcctctc 251  Q
    |||||||| ||||||||||||||    
T  39461514 ccaacacattccttattcctctc 39461492  T

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Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 251
Target Start/End: Original strand, 39457107 - 39457229
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    ||||||||||| ||||||||||||||||| || ||||||| ||||||||||||   | ||||||||||||||||       || |  |||||||| ||||    
T  39457107 aaacgacctaaataagtgtaggaagatcctccatctaacagagtcttcttacttgctgcactcatctctttcactttcttccttacctctccatccttat 39457206  T
Q  229 ccaacacactccttattcctctc 251  Q
    ||||||||||| |||||||||||    
T  39457207 ccaacacactctttattcctctc 39457229  T

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Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 248
Target Start/End: Original strand, 43311342 - 43311461
Alignment:
Q  129 aaacgacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcacnnnnnnnctgaattctccatctttat 228  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||| |||  | ||||||||||||||||||       || |  ||||||||| | |    
T  43311342 aaactacctaagcaagtgtaggaagatccaccctctaacaatgtcttcctacaatgttcactcatctctttcactttcttccttacctctccatctgttt 43311441  T
Q  229 ccaacacactccttattcct 248  Q
    ||||||||||||||||||||    
T  43311442 ccaacacactccttattcct 43311461  T

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Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 39484622 - 39484553
Alignment:
Q  133 gacctaagtaagtgtaggaagatccaccttctaacaaagtcttcttactcttttcactcatctctttcac 202  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||||| |||||||| | ||||||    
T  39484622 gacctaaataagtgtaggaagatccaccctctaacaaagtcttcctactcttctcactcatttttttcac 39484553  T

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Target: chr5; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 39458148 - 39458048
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttgaaatctctatattcaatatctgtttga 129  Q
    |||||||||||  |||||||||||  ||||| |  | || |||||||||||||||||||||||||||||||||||||||  |||||||  || |||||||    
T  39458148 gattgatgttgtaaaagaattttctgtccctacgctcgtcttcttcacttccggtgttgctttccttggtttgaaatcttcatattcataatatgtttga 39458049  T
Q  130 a 130  Q
    |    
T  39458048 a 39458048  T

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Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39486786 - 39486859
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttga 103  Q
    ||||||| ||||||||||||||||| |||||||  |  | ||||||||||||||||||||||| ||||||||||    
T  39486786 gattgatattgccaaagaattttccatccctgcgctcatcttcttcacttccggtgttgcttttcttggtttga 39486859  T

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Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 39460568 - 39460638
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtt 100  Q
    ||||||| ||||||||||||||||  ||||| |  |||| |||||||||||||||||||||| ||||||||    
T  39460568 gattgatattgccaaagaattttcagtccctacgcttgtcttcttcacttccggtgttgcttcccttggtt 39460638  T

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Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39454954 - 39455027
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttga 103  Q
    |||||||||||||||||| || ||| ||||| || | || |||||||||||| |||| ||||||||||||||||    
T  39454954 gattgatgttgccaaagagttctccatccctacactcgtcttcttcacttccagtgtagctttccttggtttga 39455027  T

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Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 39472351 - 39472424
Alignment:
Q  30 gattgatgttgccaaagaattttccctccctgcatttgtgttcttcacttccggtgttgctttccttggtttga 103  Q
    |||||||||||||||||| || ||  ||||| |  |||| |||||||||||||||||||| |||||||| ||||    
T  39472351 gattgatgttgccaaagagttctctgtccctacgcttgtcttcttcacttccggtgttgcgttccttggattga 39472424  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 103
Target Start/End: Complemental strand, 43312346 - 43312315
Alignment:
Q  72 cttcacttccggtgttgctttccttggtttga 103  Q
    ||||||||||||||||||||||||||||||||    
T  43312346 cttcacttccggtgttgctttccttggtttga 43312315  T

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