View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_high_170 (Length: 251)
Name: NF1111_high_170
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_170 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4145010 - 4144779
Alignment:
| Q |
1 |
tttgactcagagaaactgtacttctttatggatttatatcttcccattatcaattaatcaaattaaacttgtcctgcttcaatcattgcataacatatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4145010 |
tttgactcagagaaactgtacttctttatggatttatatcttcccattatcaattaatcaaattaaacttgtcctgcttcaatcactgcataacatatcg |
4144911 |
T |
|
| Q |
101 |
gcccaaacaaacatcacattagttaaaccatcaataatcatcaataatatgaaaagtatactatgtatagaatctgaaactacaatgctctaacgataat |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4144910 |
gcccaaacaaacatcacattagtta----------aatcatcaataatatgaaaagtatactatgtatagaatctgaaactacaatgctctaacgataat |
4144821 |
T |
|
| Q |
201 |
cactcatactttttcagagggattggaattttaaagaataat |
242 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4144820 |
cacttatactttttcagagggattggaattttaaagaataat |
4144779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University