View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_171 (Length: 251)

Name: NF1111_high_171
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_171
NF1111_high_171
[»] chr8 (7 HSPs)
chr8 (1-251)||(40116416-40116667)
chr8 (135-251)||(43115017-43115132)
chr8 (165-251)||(32415741-32415827)
chr8 (142-251)||(6115101-6115210)
chr8 (166-249)||(38172954-38173037)
chr8 (142-198)||(38699963-38700019)
chr8 (142-251)||(41570240-41570349)
[»] chr7 (6 HSPs)
chr7 (132-251)||(34658910-34659029)
chr7 (142-251)||(25591956-25592065)
chr7 (146-212)||(27097038-27097104)
chr7 (146-212)||(27181199-27181265)
chr7 (146-251)||(37048883-37048988)
chr7 (132-192)||(45855381-45855441)
[»] chr4 (5 HSPs)
chr4 (166-251)||(54166123-54166208)
chr4 (188-251)||(856857-856920)
chr4 (136-251)||(52628085-52628200)
chr4 (166-206)||(6016917-6016957)
chr4 (166-206)||(22785978-22786018)
[»] chr5 (1 HSPs)
chr5 (136-251)||(22098928-22099043)
[»] chr6 (2 HSPs)
chr6 (147-251)||(24428625-24428729)
chr6 (168-212)||(1780744-1780788)
[»] scaffold0110 (1 HSPs)
scaffold0110 (136-251)||(7067-7182)
[»] scaffold0002 (1 HSPs)
scaffold0002 (166-251)||(428518-428603)
[»] chr2 (3 HSPs)
chr2 (142-211)||(26180482-26180551)
chr2 (166-206)||(45656053-45656093)
chr2 (132-186)||(4435064-4435118)
[»] chr3 (2 HSPs)
chr3 (132-212)||(19795451-19795531)
chr3 (166-206)||(20843294-20843334)
[»] chr1 (4 HSPs)
chr1 (135-251)||(10177711-10177825)
chr1 (135-251)||(10406342-10406457)
chr1 (166-251)||(47367704-47367788)
chr1 (79-119)||(33241564-33241604)
[»] scaffold1709 (1 HSPs)
scaffold1709 (135-198)||(1294-1357)
[»] scaffold0481 (1 HSPs)
scaffold0481 (166-198)||(6530-6562)
[»] scaffold0361 (1 HSPs)
scaffold0361 (164-212)||(7000-7047)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 40116416 - 40116667
Alignment:
Q  1 ctctttcaatataactttgtttagctatctgggattggagaatagtaaataaagcacacacaacacaactacacaggagcggttcctttcaggttggagg 100  Q
    ||||| |||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  40116416 ctcttccaatataagtttgtttagctgtctgggattgaagaatagtaaataaagcacacacaacacaactacacaggggcggttcctttcatgttggagg 40116515  T
Q  101 ggtagctttggctacc-caattannnnnnnnnaattggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattc 199  Q
    ||||||||||||||||    ||          ||||||||| ||||||||||||||   ||||||||||||| |||||||||||||||| |||||| |||    
T  40116516 ggtagctttggctaccttttttttttttttttaattggtcggtatgtatttatatccgattactctaaataaaaaatattgaactactctaaacaagttc 40116615  T
Q  200 agttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40116616 agttgtcaaaaataaggatcaatatgaaagtaaaaatattactatatgattg 40116667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 43115017 - 43115132
Alignment:
Q  135 tggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaa 234  Q
    |||||| ||||||||| ||||  | ||||| |||||||||||||||| ||||  ||||||||||| ||||| |||||| || || ||||  |||||||||    
T  43115017 tggtcggtatgtatttttatccggatactccaaataataaatattgagctacctcaaacaaattccgttgt-aaaaattagcataaataataaagtaaaa 43115115  T
Q  235 atattactacatgattg 251  Q
    | ||||||||| |||||    
T  43115116 aaattactacaagattg 43115132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 251
Target Start/End: Original strand, 32415741 - 32415827
Alignment:
Q  165 taaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    ||||||||||| |||||  ||| ||||| ||||| ||||||||||||| |  || |||| |||||||||||||||||||||| ||||    
T  32415741 taaataataaacattgagttaccccaaataaattaagttgtcaaaaattaatataaataagaaagtaaaaatattactacatcattg 32415827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 6115210 - 6115101
Alignment:
Q  142 tatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattac 241  Q
    ||||||| |||||| || |||  ||||||||||| |||||||||| |||||||| |||||||| ||||||  |  || |||| ||||||||||| ||||     
T  6115210 tatgtatctatatccagctaccataaataataaacattgaactaccccaaacaagttcagttgccaaaaaataacataaataagaaagtaaaaaaattat 6115111  T
Q  242 tacatgattg 251  Q
    ||||| ||||    
T  6115110 tacatcattg 6115101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 38173037 - 38172954
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgat 249  Q
    |||||||||| ||||| |||| |||||||| |||| ||||  ||||| | ||| |||| |||||||||||||||| ||||||||    
T  38173037 aaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaataagaaagtaaaaatattattacatgat 38172954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 38700019 - 38699963
Alignment:
Q  142 tatgtatttatatctagttactctaaataataaatattgaactactccaaacaaatt 198  Q
    ||||||||| |||  || ||||||||||||||||||||||||||  |||||||||||    
T  38700019 tatgtatttttattcagctactctaaataataaatattgaactatcccaaacaaatt 38699963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 41570240 - 41570349
Alignment:
Q  142 tatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattac 241  Q
    |||||||||||||  || ||| | |||||||||||||||| |||| ||||| || |||||||| | |||||  | ||  ||| |||||| |||| ||||     
T  41570240 tatgtatttatattcagctaccccaaataataaatattgagctaccccaaaaaagttcagttgccgaaaatttgcatatataagaaagttaaaaaattat 41570339  T
Q  242 tacatgattg 251  Q
    ||||||||||    
T  41570340 tacatgattg 41570349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 132 - 251
Target Start/End: Original strand, 34658910 - 34659029
Alignment:
Q  132 aattggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagta 231  Q
    ||||||||| |||||||||||||   | ||| |||||||||| | ||||| ||||||||||||| |||||||||  ||||| | ||| |||| |||||||    
T  34658910 aattggtcggtatgtatttatattccgctaccctaaataatatacattgagctactccaaacaagttcagttgttgaaaattatgataaataagaaagta 34659009  T
Q  232 aaaatattactacatgattg 251  Q
    ||||||||||||||||||||    
T  34659010 aaaatattactacatgattg 34659029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 251
Target Start/End: Original strand, 25591956 - 25592065
Alignment:
Q  142 tatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattac 241  Q
    ||||||| |||||| || ||| | |||||||||||||||| ||||||||||||| |||||||| ||||||  |  || |||| ||||||||||| ||||     
T  25591956 tatgtatctatatccagctaccccaaataataaatattgagctactccaaacaagttcagttgccaaaaaacaacataaataagaaagtaaaaaaattat 25592055  T
Q  242 tacatgattg 251  Q
    ||||| ||||    
T  25592056 tacatcattg 25592065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 27097038 - 27097104
Alignment:
Q  146 tatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaat 212  Q
    ||||| ||||||| ||| | |||||||||||||||| |||| |||||||||||  |||||| |||||    
T  27097038 tatttgtatctagctaccccaaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27097104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 27181265 - 27181199
Alignment:
Q  146 tatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaat 212  Q
    ||||| ||||||| ||| | |||||||||||||||| |||| |||||||||||  |||||| |||||    
T  27181265 tatttgtatctagctaccccaaataataaatattgagctaccccaaacaaatttggttgtcgaaaat 27181199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 37048883 - 37048988
Alignment:
Q  146 tatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactaca 245  Q
    ||||||||| ||||||  ||||||||||||||||||  || | ||||||| ||   ||||| ||||| || || |||| |||||| |||| |||||||||    
T  37048883 tatttatatttagttatcctaaataataaatattgagataattcaaacaagtttgattgtcgaaaatcagcatgaataagaaagtgaaaaaattactaca 37048982  T
Q  246 tgattg 251  Q
    | ||||    
T  37048983 tcattg 37048988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 45855381 - 45855441
Alignment:
Q  132 aattggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaa 192  Q
    ||||||||| ||| ||||||||| ||| ||| | |||||||||||||||| |||| |||||    
T  45855381 aattggtcggtatatatttatatttagctaccccaaataataaatattgagctaccccaaa 45855441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 54166208 - 54166123
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    |||||||||| ||||| ||||  ||||||| |||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||    
T  54166208 aaataataaacattgagctacctcaaacaagttcagttgtctaaaattaggataaataagaaagtaaaaatattactacatgattg 54166123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 856920 - 856857
Alignment:
Q  188 ccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    |||||||| |||||||||| ||||| | ||| |||| |||||||||||||||||||||||||||    
T  856920 ccaaacaagttcagttgtcgaaaattatgataaataagaaagtaaaaatattactacatgattg 856857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 52628085 - 52628200
Alignment:
Q  136 ggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaa 235  Q
    ||||| ||||||||||||||  | |||   |||||||||| ||||| |||| |||||||| |||| ||||  ||||| | ||| |||| ||| |||||||    
T  52628085 ggtcggtatgtatttatatccggctacctcaaataataaacattgagctaccccaaacaagttcaattgttgaaaattaagataaataagaaggtaaaaa 52628184  T
Q  236 tattactacatgattg 251  Q
    ||||| ||||||||||    
T  52628185 tattattacatgattg 52628200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 6016957 - 6016917
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtc 206  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  6016957 aaataataaacattgagctaccccaaacaaattcagttgtc 6016917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 22785978 - 22786018
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtc 206  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  22785978 aaataataaacattgagctaccccaaacaaattcagttgtc 22786018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 136 - 251
Target Start/End: Original strand, 22098928 - 22099043
Alignment:
Q  136 ggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaa 235  Q
    ||||| |||||||||||||   | ||| | |||||| ||||||||| |||| |||||||| || ||||||| ||||| | ||| |||| |||||||||||    
T  22098928 ggtcggtatgtatttatattcggctaccccaaataaaaaatattgagctaccccaaacaagtttagttgtcgaaaattaagataaataagaaagtaaaaa 22099027  T
Q  236 tattactacatgattg 251  Q
    ||||||||||||||||    
T  22099028 tattactacatgattg 22099043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 147 - 251
Target Start/End: Original strand, 24428625 - 24428729
Alignment:
Q  147 atttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacat 246  Q
    |||||||||  ||||| |||||||||||| |||||| ||| | ||||||||||||||| | ||||| || || |||  |||||||||| |||||||||||    
T  24428625 atttatatccggttaccctaaataataaacattgaattaccctaaacaaattcagttgccgaaaattagtataaattagaaagtaaaattattactacat 24428724  T
Q  247 gattg 251  Q
    |||||    
T  24428725 gattg 24428729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 1780788 - 1780744
Alignment:
Q  168 ataataaatattgaactactccaaacaaattcagttgtcaaaaat 212  Q
    |||||||| ||||| |||| ||||||||||||||||||| |||||    
T  1780788 ataataaacattgagctaccccaaacaaattcagttgtcgaaaat 1780744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 251
Target Start/End: Complemental strand, 7182 - 7067
Alignment:
Q  136 ggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaa 235  Q
    ||||| ||||||||||||||    ||| | |||||||||| |||||  ||| |||||||| |||||||||| ||||| | ||| ||||  ||||||||||    
T  7182 ggtcggtatgtatttatatccgactaccccaaataataaacattgagttaccccaaacaagttcagttgtcgaaaattaagataaataaaaaagtaaaaa 7083  T
Q  236 tattactacatgattg 251  Q
    ||||| ||| ||||||    
T  7082 tattattacgtgattg 7067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 428603 - 428518
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    |||||||||| ||||| |||| | ||| ||||||||||||||||||| |  || ||||  ||||||||||||| | ||||||||||    
T  428603 aaataataaacattgagctaccctaaataaattcagttgtcaaaaattaatataaataataaagtaaaaatatcaatacatgattg 428518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 26180482 - 26180551
Alignment:
Q  142 tatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaa 211  Q
    ||||||||||||||||| ||||  |||||||||||||||| ||||  ||||||| || ||||||| ||||    
T  26180482 tatgtatttatatctagctacttcaaataataaatattgagctacctcaaacaagtttagttgtccaaaa 26180551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 45656093 - 45656053
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtc 206  Q
    |||||||||||||||| |||| |||||||||||||||||||    
T  45656093 aaataataaatattgagctaccccaaacaaattcagttgtc 45656053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 4435064 - 4435118
Alignment:
Q  132 aattggtcgctatgtatttatatctagttactctaaataataaatattgaactac 186  Q
    ||||||||| ||||||||||||||  |||||  ||||||||||| ||||||||||    
T  4435064 aattggtcggtatgtatttatatccggttaccttaaataataaacattgaactac 4435118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 19795451 - 19795531
Alignment:
Q  132 aattggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaat 212  Q
    ||||||| | ||| ||||||||| ||| ||||| |||||||||||||||| |||| |||||||| ||  |||||| |||||    
T  19795451 aattggttggtatatatttatatttagctactccaaataataaatattgagctaccccaaacaagtttggttgtcgaaaat 19795531  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 20843334 - 20843294
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtc 206  Q
    |||||||||| ||||| |||| |||||||||||||||||||    
T  20843334 aaataataaacattgagctaccccaaacaaattcagttgtc 20843294  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 251
Target Start/End: Original strand, 10177711 - 10177825
Alignment:
Q  135 tggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaa 234  Q
    |||||| ||||||||| |||| || ||||| |||||||||||||||| |||| | ||| |||||| |||| ||||||| |  || ||||  |||||||||    
T  10177711 tggtcggtatgtatttttatccagctactccaaataataaatattgagctaccctaaataaattccgttg-caaaaattaacataaataataaagtaaaa 10177809  T
Q  235 atattactacatgattg 251  Q
    | ||||||||| |||||    
T  10177810 a-attactacaagattg 10177825  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 251
Target Start/End: Complemental strand, 10406457 - 10406342
Alignment:
Q  135 tggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaa 234  Q
    |||||| ||||||||| ||||  | ||||| ||||||||||||||||  |||  |||||||||||  |||| |||||| || || ||||  |||||||||    
T  10406457 tggtcggtatgtatttttatccggctactccaaataataaatattgagttacctcaaacaaattccattgt-aaaaattagtataaataataaagtaaaa 10406359  T
Q  235 atattactacatgattg 251  Q
    | ||||||||| |||||    
T  10406358 aaattactacaagattg 10406342  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 251
Target Start/End: Original strand, 47367704 - 47367788
Alignment:
Q  166 aaataataaatattgaactactccaaacaaattcagttgtcaaaaataaggatcaatatgaaagtaaaaatattactacatgattg 251  Q
    |||||||||| ||||| |||| ||||||| || || ||||| ||||| || ||  ||| ||||||||||| |||||||||||||||    
T  47367704 aaataataaacattgagctaccccaaacatatccaattgtcgaaaattagcatatataagaaagtaaaaa-attactacatgattg 47367788  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 33241604 - 33241564
Alignment:
Q  79 gcggttcctttcaggttggaggggtagctttggctacccaa 119  Q
    |||||||||||||  | ||||||||||||||||||||||||    
T  33241604 gcggttcctttcatataggaggggtagctttggctacccaa 33241564  T

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Target: scaffold1709 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1709
Description:

Target: scaffold1709; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 1294 - 1357
Alignment:
Q  135 tggtcgctatgtatttatatctagttactctaaataataaatattgaactactccaaacaaatt 198  Q
    |||||| ||||||||| ||||  | ||||| ||||||||||||||||||||| ||||| |||||    
T  1294 tggtcggtatgtatttttatccggctactccaaataataaatattgaactaccccaaataaatt 1357  T

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Target: scaffold0481 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 198
Target Start/End: Original strand, 6530 - 6562
Alignment:
Q  166 aaataataaatattgaactactccaaacaaatt 198  Q
    |||||||||||||||| ||||||||||||||||    
T  6530 aaataataaatattgagctactccaaacaaatt 6562  T

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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 7000 - 7047
Alignment:
Q  164 ctaaataataaatattgaactactccaaacaaattcagttgtcaaaaat 212  Q
    |||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  7000 ctaaataataaatattgagctac-ccaaacaaatttagttgtcgaaaat 7047  T

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