View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_172 (Length: 251)

Name: NF1111_high_172
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_172
NF1111_high_172
[»] chr8 (11 HSPs)
chr8 (9-246)||(2915856-2916093)
chr8 (13-246)||(2910898-2911131)
chr8 (9-194)||(2980380-2980565)
chr8 (25-246)||(3141891-3142112)
chr8 (9-242)||(9850829-9851062)
chr8 (10-83)||(3170158-3170231)
chr8 (166-247)||(13791585-13791666)
chr8 (162-246)||(3173560-3173644)
chr8 (165-246)||(2711014-2711095)
chr8 (25-74)||(3002489-3002538)
chr8 (9-74)||(2711183-2711248)
[»] chr6 (1 HSPs)
chr6 (50-242)||(8942295-8942487)
[»] chr1 (1 HSPs)
chr1 (25-83)||(10755548-10755606)
[»] scaffold0065 (2 HSPs)
scaffold0065 (10-83)||(45608-45681)
scaffold0065 (165-246)||(50932-51013)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 246
Target Start/End: Complemental strand, 2916093 - 2915856
Alignment:
Q  9 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2916093 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtcaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaa 2915994  T
Q  109 aacttatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2915993 aacttatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaa 2915894  T
Q  209 aatggattgaattgagaacttacttgatctgtggtgct 246  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2915893 aatggattgaattgagaacttacttgatgtgtggtgct 2915856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 2911131 - 2910898
Alignment:
Q  13 gaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaact 112  Q
    ||||||||||||||||| ||||| ||| || |||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||    
T  2911131 gaaaagaagatatgggtgtgtgtctctaaaaactttgatgtcaaaactattttgaagaaaatattggagtcattattaaatgggaaagttgacgaaaact 2911032  T
Q  113 tatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatg 212  Q
    ||||||| || |||||||||||||||||||| ||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2911031 tatcattggacaacttgcaaaataacctccgtcaaaatttatcagaaagaaaatacttgttagtcctagatgacatttggaatgagagtcaccaaaaatg 2910932  T
Q  213 gattgaattgagaacttacttgatctgtggtgct 246  Q
    ||| || ||||| ||||||||||| |||||||||    
T  2910931 gatcgagttgaggacttacttgatgtgtggtgct 2910898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 194
Target Start/End: Original strand, 2980380 - 2980565
Alignment:
Q  9 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaa 108  Q
    |||||||||||  || ||||||||||| |||||  |||||||||| ||||||||| ||||||||||| ||||||| |||   ||| | ||| |||||||     
T  2980380 gtttgaaaagagaatgtgggtatgtgtctctgataactttgatgtcaaaactattctgaagaacataatggagtcattaaccaataggaaatttgatgat 2980479  T
Q  109 aacttatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaa 194  Q
    |  ||||||||  | ||||||||||| |  || ||  | |||||| | || | ||||||||| |||||||||||||||||||||||    
T  2980480 acgttatcattgcaaaacttgcaaaacatgcttcgtgacaatttaactggtaaaaaatacttgttagtcctagatgacatttggaa 2980565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 246
Target Start/End: Complemental strand, 3142112 - 3141891
Alignment:
Q  25 tgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagaga 124  Q
    ||||| ||||| |||||  |||||||||| ||||||||| |||||||||| |||||||| |||  ||| | |  | || |||| |  ||||||||||| |    
T  3142112 tgggtttgtgtctctgataactttgatgtcaaaactattgtgaagaacatgttggagtcattaacaaaggaaccaattaatgatacattatcattagaaa 3142013  T
Q  125 acttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgag 224  Q
    |||||||||| |  || ||  ||||| || | || | ||||||||| ||||||||||||||||||||||| ||||||  |  |||||||  | |||||||    
T  3142012 acttgcaaaacatgcttcgagaaaatctaactggtaaaaaatacttgttagtcctagatgacatttggaacgagagttttggaaaatgggctcaattgag 3141913  T
Q  225 aacttacttgatctgtggtgct 246  Q
     ||||| ||||| | |||||||    
T  3141912 gacttatttgatgtatggtgct 3141891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 9851062 - 9850829
Alignment:
Q  9 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaa 108  Q
    ||||||||||| ||| ||||||||||| |||||| ||||||| || ||||||||| |||||||||| |||||||| |||   ||    ||| |||||||     
T  9851062 gtttgaaaagaggatgtgggtatgtgtctctgaaaactttgaagtcaaaactattgtgaagaacatgttggagtcattaaccaagaacaaaattgatgat 9850963  T
Q  109 aacttatcattagagaacttgcaaaataacctccggcaaaatttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaa 208  Q
       |||||||| || |||||||||| ||| || ||  |  ||||| | || |  | |||||| ||||| |||||||||||||||||||||||| || |||    
T  9850962 gcattatcattggacaacttgcaaactaagcttcgtgaccatttaactggtaagagatacttgttagttctagatgacatttggaatgagagttatgaaa 9850863  T
Q  209 aatggattgaattgagaacttacttgatctgtgg 242  Q
    |||||  | ||||||  ||||| ||||| |||||    
T  9850862 aatgggctcaattgaagacttatttgatgtgtgg 9850829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Complemental strand, 3170231 - 3170158
Alignment:
Q  10 tttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtc 83  Q
    |||||||||| ||| ||||||||||| |||||  |||||||||| ||||||||| ||||||| || ||||||||    
T  3170231 tttgaaaagaggatgtgggtatgtgtctctgataactttgatgtcaaaactattctgaagaaaatgttggagtc 3170158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 13791585 - 13791666
Alignment:
Q  166 tactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtggtgctg 247  Q
    ||||| |||||| | ||||||||||| ||||  |||||| ||||||||| | ||||||||||||| ||||| ||||||||||    
T  13791585 tacttgttagtcttggatgacatttgcaatgctagtcatgaaaaatggactcaattgagaacttatttgatgtgtggtgctg 13791666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 3173644 - 3173560
Alignment:
Q  162 aaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtggtgct 246  Q
    ||||||||| ||||||||||||||||||||||| |||||| |   |||||||| | ||||||| ||| | ||||| |||||||||    
T  3173644 aaaatacttattagtcctagatgacatttggaacgagagttacgtaaaatggactcaattgaggactcatttgatgtgtggtgct 3173560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Complemental strand, 2711095 - 2711014
Alignment:
Q  165 atactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtggtgct 246  Q
    |||||| |||||| | |||||||||||||| |||||| || |||| |||  ||||||||| ||||| ||||| |||||||||    
T  2711095 atacttgttagtcttggatgacatttggaacgagagttatgaaaagtgggatgaattgaggacttatttgatgtgtggtgct 2711014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 3002489 - 3002538
Alignment:
Q  25 tgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacat 74  Q
    ||||||||||| |||||| |||||||||| ||||||||| ||||||||||    
T  3002489 tgggtatgtgtctctgaaaactttgatgtaaaaactattgtgaagaacat 3002538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 2711248 - 2711183
Alignment:
Q  9 gtttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacat 74  Q
    |||||||||||  || ||||||||||| || ||  |||||||||| ||||||||| ||||||||||    
T  2711248 gtttgaaaagagtatgtgggtatgtgtctcggataactttgatgtcaaaactattctgaagaacat 2711183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 50 - 242
Target Start/End: Complemental strand, 8942487 - 8942295
Alignment:
Q  50 atgtgaaaactattttgaagaacatattggagtcgttattaaatggaaaagttgatgaaaacttatcattagagaacttgcaaaataacctccggcaaaa 149  Q
    |||| |||||||||||||||||  ||||||||||||||||| ||||||||||||| |||||||||||||| || |||||||||| ||| ||| | |||||    
T  8942487 atgtcaaaactattttgaagaaggtattggagtcgttattatatggaaaagttgacgaaaacttatcattggacaacttgcaaagtaatctctgtcaaaa 8942388  T
Q  150 tttatcgggaagaaaatactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtgg 242  Q
    |||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||    
T  8942387 tttatcagaaataaaatacttattagtcctagatgacatttggaatgagagtcatcaaaaaaggattgaattgagtacttacttgatttgtgg 8942295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 10755606 - 10755548
Alignment:
Q  25 tgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtc 83  Q
    ||||||||||| |||||  ||||||| || ||||||||| |||||||||| ||||||||    
T  10755606 tgggtatgtgtctctgataactttgacgtcaaaactattctgaagaacatgttggagtc 10755548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 45608 - 45681
Alignment:
Q  10 tttgaaaagaagatatgggtatgtgtgtctgaagactttgatgtgaaaactattttgaagaacatattggagtc 83  Q
    |||||||||| ||| ||||||||||| ||| |  |||||||||| ||||||||| | |||||||| ||| ||||    
T  45608 tttgaaaagaggatgtgggtatgtgtctctaataactttgatgtcaaaactattctaaagaacatgttgaagtc 45681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 50932 - 51013
Alignment:
Q  165 atactttttagtcctagatgacatttggaatgagagtcatcaaaaatggattgaattgagaacttacttgatctgtggtgct 246  Q
    |||||| ||||||||||||||||||||||| ||||||  | |||||||   | ||||||| ||||| || || |||||||||    
T  50932 atacttgttagtcctagatgacatttggaacgagagttttgaaaaatgttctcaattgaggacttattttatgtgtggtgct 51013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University