View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_176 (Length: 250)

Name: NF1111_high_176
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_176
NF1111_high_176
[»] chr3 (1 HSPs)
chr3 (1-221)||(42450848-42451070)
[»] scaffold0069 (1 HSPs)
scaffold0069 (129-194)||(39826-39891)
[»] chr7 (3 HSPs)
chr7 (129-194)||(9241612-9241677)
chr7 (7-61)||(27857818-27857872)
chr7 (88-132)||(27857894-27857938)
[»] chr6 (1 HSPs)
chr6 (129-194)||(17718851-17718916)
[»] chr5 (3 HSPs)
chr5 (129-194)||(23615702-23615767)
chr5 (129-194)||(23847098-23847163)
chr5 (129-194)||(17038558-17038622)
[»] chr8 (2 HSPs)
chr8 (129-176)||(19449355-19449402)
chr8 (129-176)||(19531674-19531721)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42451070 - 42450848
Alignment:
Q  1 ccagtatgtcaattctcttaaatccatccaaatttgataaatccttggaaattgccaataagccaataga--gnnnnnnnnnnntctttatgtgaacatg 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |           ||||||||||||||||    
T  42451070 ccagtatgtcaattctcttaaatccatccaaatttgataaatccttggaaattgccaataagccaatagaaagaaaaaaaaaaatctttatgtgaacatg 42450971  T
Q  99 aaaatcgtgtatgccaaattcacttactctttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcagttga 198  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||    
T  42450970 aaaatcgtatatgccaaattcactttctctttgtgaatttccaaatccaaagaaacctaaataaaactagagcactgtcaaatgaaagaatttcagttga 42450871  T
Q  199 atcaaaaaatctgaataactcac 221  Q
    |||||||||||||||||||||||    
T  42450870 atcaaaaaatctgaataactcac 42450848  T

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Target: scaffold0069 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 39891 - 39826
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    ||||||||||||||||| |||||| ||| ||||||||||||||||||| ||||||||| |||||||    
T  39891 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagtcaaatgaatgcatttcag 39826  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 9241677 - 9241612
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| |||||||    
T  9241677 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcag 9241612  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 27857818 - 27857872
Alignment:
Q  7 tgtcaattctcttaaatccatccaaatttgataaatccttggaaattgccaataa 61  Q
    ||||||||||||||||||||||||||| ||| || | ||||||||||||||||||    
T  27857818 tgtcaattctcttaaatccatccaaatctgacaagttcttggaaattgccaataa 27857872  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 27857894 - 27857938
Alignment:
Q  88 atgtgaacatgaaaatcgtgtatgccaaattcacttactctttgt 132  Q
    |||||||||||||||  ||||| ||||||||||||| ||||||||    
T  27857894 atgtgaacatgaaaactgtgtaagccaaattcactttctctttgt 27857938  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 17718916 - 17718851
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| |||||||    
T  17718916 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcag 17718851  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 23615767 - 23615702
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| |||||||    
T  23615767 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcag 23615702  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 23847163 - 23847098
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    ||||||||||||||||| |||||| ||| |||||||| |||||||||| ||||||||| |||||||    
T  23847163 ttgtgaatttccaaatcaaaagaagcctcaagaaaaccagagcacagtcaaatgaatgcatttcag 23847098  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 17038558 - 17038622
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagttaaatgaatgaatttcag 194  Q
    |||| |||||||||||| |||||| |||||| ||||| ||||| |||| ||||||||| |||||||    
T  17038558 ttgtaaatttccaaatcaaaagaagcctaaa-aaaaccagagcgcagtcaaatgaatgcatttcag 17038622  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 19449355 - 19449402
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagt 176  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  19449355 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagt 19449402  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 19531721 - 19531674
Alignment:
Q  129 ttgtgaatttccaaatccaaagaaacctaaagaaaactagagcacagt 176  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||    
T  19531721 ttgtgaatttccaaatcaaaagaagcctcaagaaaactagagcacagt 19531674  T

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