View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_196 (Length: 201)
Name: NF1111_high_196
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_196 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 40103534 - 40103366
Alignment:
| Q |
20 |
ccaacaatggagtggcaaaacaccaccttacggcgccgcagtaagcaactcgcaacgacaacaacctcctccttcacaggttagggttatcaacaatttt |
119 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40103534 |
ccaacaatggagtggcaa--caccaccttacggcgccgcagtaagcaactcgcaacgacaacaacctcctccttcacaggttagggttatcaacaatttt |
40103437 |
T |
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| Q |
120 |
tctccttttccgcatattcatcatttttctctacactttcgatttaaaacaggggaaacacttatattctt |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40103436 |
tctccttttccgcatattcatcatttttctctacactttcgatttaaaacaggggaaacacttattttctt |
40103366 |
T |
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