View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_high_21 (Length: 468)
Name: NF1111_high_21
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_21 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 76 - 434
Target Start/End: Complemental strand, 2060193 - 2059838
Alignment:
| Q |
76 |
gtgagatgaagcaagcaccccagaaatcaaatttcttaatccnnnnnnngggtatgttctaaaattaccttaaagtaattatgacttaaagtcaaattat |
175 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
2060193 |
gtgacatgaagcaagcaccc-agaaatcaaatttcttaatcctttttttggttatgttctaaaattacct-aaagtaattatgacttcaagtcaaattat |
2060096 |
T |
|
| Q |
176 |
taggaagaacttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttga |
275 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2060095 |
taggaagaacttatgtataaaaaaagctcatttttagggtcaaaaacatcaaaacacct-caatcatggtggtcatcaatcaaatagcaaatagttttga |
2059997 |
T |
|
| Q |
276 |
aatgaaagtagattagcaatgctatttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaa |
375 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2059996 |
aatgaaagtagattagcaatgctatttctcgcaactaatatcatctcgaaagtttcgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaa |
2059897 |
T |
|
| Q |
376 |
cagagcaagtattgcttgtatgtggttacatgttttatacacttaagccatcgtgagag |
434 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2059896 |
caaagcaagtattgcttgtatgtggttacatgttttatacacttaagccattgtgagag |
2059838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 201 - 414
Target Start/End: Complemental strand, 2063833 - 2063620
Alignment:
| Q |
201 |
gctcaattttagggtcaaaaacatcaaaacaccttcaatcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
300 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2063833 |
gctcatttttagggtaaaaaacatcaaaacaccttaagtcatggtggtcatcaatcaaatagcaaatagttttgaaatgaaagtagattagcaatgctat |
2063734 |
T |
|
| Q |
301 |
ttcttgcaactaatatcatctcgaaagttttgcgaataaagtttcaaccaattaagttgtgcctttcacggaaaacagagcaagtattgcttgtatgtgg |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||| |||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2063733 |
ttctcgcaactaatatcatctcgaaagtttcacgaataaagtttcaacaaatgaagtagtgtctttcacgaaaaacatagcaagtattgcttgtatgtgg |
2063634 |
T |
|
| Q |
401 |
ttacatgttttata |
414 |
Q |
| |
|
||| | |||||||| |
|
|
| T |
2063633 |
ttaaacgttttata |
2063620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 164 - 293
Target Start/End: Complemental strand, 2055773 - 2055641
Alignment:
| Q |
164 |
aagtcaaattattaggaagaac-ttatgtatnnnnnnngctcaattttagggtcaaaaacatcaaaacaccttc---aatcatggtggtcatcaatcaaa |
259 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||| ||||||| | |||||||| |||| ||||| |
|
|
| T |
2055773 |
aagtcaaattattaggaagaacgttatgtataaaagaagctcatttttagggtcaaaatcatcaaa-caccttcttcagtcatggtgatcattgatcaag |
2055675 |
T |
|
| Q |
260 |
tagcaaatagttttgaaatgaaagtagattagca |
293 |
Q |
| |
|
||||||| |||||| |||| |||||||||||||| |
|
|
| T |
2055674 |
tagcaaagagttttaaaataaaagtagattagca |
2055641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 416
Target Start/End: Original strand, 20163111 - 20163193
Alignment:
| Q |
335 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
416 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
20163111 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20163193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 416
Target Start/End: Complemental strand, 20194385 - 20194303
Alignment:
| Q |
335 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
416 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
20194385 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
20194303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 416
Target Start/End: Complemental strand, 44278897 - 44278815
Alignment:
| Q |
335 |
aataaagtttcaaccaattaagttgtgcctttca-cggaaaacagagcaagtattgcttgtatgtggttacatgttttataca |
416 |
Q |
| |
|
||||||||||||| |||||||| ||| |||| ||||||||| | |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
44278897 |
aataaagtttcaaacaattaagcagtgtcttttttcggaaaacatggtaagtattgtttgtatgtggttgcatgttttataca |
44278815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University