View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_24 (Length: 454)
Name: NF1111_high_24
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 128 - 424
Target Start/End: Complemental strand, 32266820 - 32266522
Alignment:
| Q |
128 |
tgtggtgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcatcaaccttcttcttcttctgtta |
227 |
Q |
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| T |
32266820 |
tgtgttgctgctacaacaatgaatctaaggaaatctaagagaagaattaggttcaagtctattactctttcaaatcagcaaccttcttcttcttctgtta |
32266721 |
T |
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| Q |
228 |
atggcggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagag--annnnnnnggtcataag |
325 |
Q |
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| T |
32266720 |
atggtggttcttcatctgtttctgagatggaacaggaacaacaagaagaggttgctagatgtttgatgttgttgtctagagtattttttttggtcataag |
32266621 |
T |
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| Q |
326 |
ggtcgttttgtttctgaatcttctgataataacaatgagattgttttagagacgaaatcgaagattgttatcagaaatggtaacaaatttgtagctaat |
424 |
Q |
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| T |
32266620 |
ggtcgttttgtttctgaatcttctgataataacaatgagattgttctagagacgaaatccaagattgttatcagaaatggtaacaaatttgtagctaat |
32266522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 32266921 - 32266852
Alignment:
| Q |
30 |
gacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32266921 |
gacacatggcttctcattctgagaaagagaaaaagatcaacaaggctatgatggaggaggatactcaatc |
32266852 |
T |
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