View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_37 (Length: 423)
Name: NF1111_high_37
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 30 - 404
Target Start/End: Original strand, 12670214 - 12670587
Alignment:
| Q |
30 |
cctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaagtctagtag |
129 |
Q |
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| T |
12670214 |
cctttaacattaatttagcatatgaaaaaggttttgagctatgactatatgatgaaagtaaaatgattatggagatttccacattgaacaagtctagtag |
12670313 |
T |
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| Q |
130 |
tacctttgacaaatttgtcttttggtttcatctttgagaccacttttttcctcactactctatttctatttcaagaaagtaagtgaaagatnnnnnnnnn |
229 |
Q |
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| T |
12670314 |
tacctttgacaaatttgtcttttggtttcatctttgagacaacttttttcctcactactctatttctatttcaagaaagtaagtgaaagatagaagagaa |
12670413 |
T |
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| Q |
230 |
nnnnnnnnngagtttttgttttggtaagataggaggaaagtgaggaaatgaagatgattataagggaagnnnnnnnnggaaagatgagtgcatgaggagg |
329 |
Q |
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| T |
12670414 |
gagagagaggaatttttgttatggtaagataggaggaaagtgaggaaatgaagatgtttataagggaag-aaaaaaaggaaagatgagtgcatgaggagg |
12670512 |
T |
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| Q |
330 |
ctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgtc |
404 |
Q |
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| T |
12670513 |
ctagtgggctttcccaatggacttgatgtagacaggtccaaggcccagaaagatctaaatggacctgatgatgtc |
12670587 |
T |
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