View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_40 (Length: 418)
Name: NF1111_high_40
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 47562131 - 47561758
Alignment:
| Q |
30 |
tagacaatttgtctgcccgagtcaattgtttattacgtgtaaggtaaatgacctatctgataaattatatttgttctatacttttaagtttatgtggttt |
129 |
Q |
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| T |
47562131 |
tagacaatttgtctgcccgagtcaattgtttattacgtgtaaggtaaatgacctatctgataaattatatatgttctatacttttaagtttatgtggttt |
47562032 |
T |
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| Q |
130 |
cttttcatgtaaagtaaaaataatannnnnnnnnatcaacaatatcatcttaagacaatgtgtttaacatctatacaaatacatgcatatatagttgatg |
229 |
Q |
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| T |
47562031 |
cttttcatgtaaagtaaaaataatatttttttt-atcaacaatatcatcttaagacaatgtgtttaacatctatacaaatacatgcatatatagttgatg |
47561933 |
T |
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| Q |
230 |
ataaaaaatatttacatccaatagccagtaatcatattttgctatcttttatgcacaacgaaaatatctccttaataaattagattttacagtatcaatt |
329 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47561932 |
ataaaaaatatttacatccaatagcaagtaatcatattttgctatcttttatgcacaacgaaaatatctccttaataaattagattttacagtatcaatt |
47561833 |
T |
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| Q |
330 |
ttctcattttattttcctttgttatcttgcagtactaagattatataggtgcttcaaccaatttccctattgata |
404 |
Q |
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| T |
47561832 |
ttctcattttattttcctttgttatcttgcagtactaagattatataggtgcttcaaccaatttccctattgata |
47561758 |
T |
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