View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_high_44 (Length: 414)
Name: NF1111_high_44
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_44 |
 | |
|
| [»] scaffold0932 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 403
Target Start/End: Original strand, 17148745 - 17149147
Alignment:
| Q |
1 |
aaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaatcccaacagcaccacagggc |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17148745 |
aaattcagcctctagagcataagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaatcccaacagcaccacagggc |
17148844 |
T |
|
| Q |
101 |
tgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaactgttattctcttagtctgca |
200 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
17148845 |
tgcgctcccatagaagaggcgtcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaatttttattctcttagtctgca |
17148944 |
T |
|
| Q |
201 |
gagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaataca |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17148945 |
aagggatggaaaaaagcctagagatgttgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaataca |
17149044 |
T |
|
| Q |
301 |
gttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctccatccaaatgatccatatagtgtgaatgatggcagagttcaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
17149045 |
gttgaacagggaagccatgtgccgaattttgttatgaaaacatctctgattccgctccatccagatgatccatatagtgtgaatgatggcagagttcaaa |
17149144 |
T |
|
| Q |
401 |
ata |
403 |
Q |
| |
|
||| |
|
|
| T |
17149145 |
ata |
17149147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 28789864 - 28789550
Alignment:
| Q |
1 |
aaattcagcctctagagcagaagcatatccaatgttgctagatattgccccaataaaagaggcagagtttctaatcacaatcccaacagcaccacagggc |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28789864 |
aaattcagcctcaagagcagaagcatatccaatgttgctagatatggccccaataaatgaagcagagtttctaatcactatcccaacagcaccacagggc |
28789765 |
T |
|
| Q |
101 |
tgcgctcccatagaagagccatcacaattgaatttaatcagatcattgacaggagggcaccaatgaaccaattgcctaactgttattctcttagtctgca |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| | |
|
|
| T |
28789764 |
tgcgctcctatagaagagccatcacagttgaatttaatcagttcattggcaggagggcaccaatgaaccagttgcctaactgttattctcttactctaga |
28789665 |
T |
|
| Q |
201 |
gagggatggaaaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaataca |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
28789664 |
gagggatggaaaaaagcctagagatgttgtagtctttcatgtcagagttaccttaagccaaaaccaaatgatagctaattttaacctccgccagaatata |
28789565 |
T |
|
| Q |
301 |
gttgaacagggaagc |
315 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
28789564 |
gttgaacagggaagc |
28789550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0932 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0932
Description:
Target: scaffold0932; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 2024 - 2122
Alignment:
| Q |
211 |
aaaaagcctagagatattgtagtctttcatgtcagagttacctttagctaaaaccaaatgatagctaattttaacctccgccaaaatacagttgaacag |
309 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| |||||||| | |||||| || |||||| ||| |||| |||||||| | |||||||||||| ||||| |
|
|
| T |
2024 |
aaaaagccttgagattttgtaatctttcatatcagagttgcatttagccaagaccaaagtataactaagcttaacctcagacaaaatacagttaaacag |
2122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University