View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_47 (Length: 404)
Name: NF1111_high_47
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_47 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 44 - 404
Target Start/End: Complemental strand, 7342566 - 7342204
Alignment:
| Q |
44 |
accaacccaactcttgcattcaataatcccagccccaaaggccacccttcttcctgcattaacaccaaaaccatccaaagtctatatataaaataatcat |
143 |
Q |
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| T |
7342566 |
accaacccaactcttgcattcaataatcccagccccaaaggccacccttcttcctgcattaacaccaaaaccatccaaagtctatatataaaataatcat |
7342467 |
T |
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| Q |
144 |
tnnnnnnnnnnnn--cagaatatgatagactaaattacagttataaatcgttttttaaaactttaactgcaagttataaattgcagctacataccatatg |
241 |
Q |
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| T |
7342466 |
taaaaaaaacaaaaacagaatatgatagactaaattacagttataaatcgttttttaaaactttaactgcaagttataaattgcagctacataccatatg |
7342367 |
T |
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| Q |
242 |
ctactgcaatgcctaacacaatatcaaagttttgttatctccacgactgacggtcatgtttggattgacttatatgatcttatcaactgaaataatcact |
341 |
Q |
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| T |
7342366 |
ctactgcaatgcctaacacaatatcaaagttttgttatctccaggactgacggtcatgtttggattgacttatatgatcttatcaactgaaataatcact |
7342267 |
T |
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| Q |
342 |
tgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccataagttgttttcatc |
404 |
Q |
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| T |
7342266 |
tgcgagactgttgtagttgacagatgaaaacaagttataatgtgtccgtaagttgttttcatc |
7342204 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 21872213 - 21872269
Alignment:
| Q |
297 |
atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt |
353 |
Q |
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| T |
21872213 |
atgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtt |
21872269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 22878250 - 22878194
Alignment:
| Q |
297 |
atgtttggattgacttatatgatcttatcaactgaaataatcacttgcgagactgtt |
353 |
Q |
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| T |
22878250 |
atgtttggattgacttatttgagcttatccactgacataagcacttgtgagactgtt |
22878194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 343
Target Start/End: Complemental strand, 17369354 - 17369309
Alignment:
| Q |
298 |
tgtttggattgacttatatgatcttatcaactgaaataatcacttg |
343 |
Q |
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| T |
17369354 |
tgtttggattgacttatttgaacttatctactgacataatcacttg |
17369309 |
T |
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