View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_51 (Length: 396)
Name: NF1111_high_51
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_51 |
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| [»] scaffold1445 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold1445 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 30 - 396
Target Start/End: Complemental strand, 1446 - 1080
Alignment:
| Q |
30 |
tcagtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctacataaaaatcaaataatgaattagaattaccat |
129 |
Q |
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| T |
1446 |
tcagtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctacataaaaatcaaataatgaattagaattaccat |
1347 |
T |
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| Q |
130 |
taccacggaattgacattggtaagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactccgaatttcc |
229 |
Q |
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| T |
1346 |
taccacggaattgacattggtaagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactctgaatttcc |
1247 |
T |
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| Q |
230 |
gaaggacgaaagaaccaaacaactctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggt |
329 |
Q |
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| T |
1246 |
gaaggacgaaagaaccaaacaactctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggt |
1147 |
T |
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| Q |
330 |
aaaaataaacacaatcatgtagaaaatactcaacaccttcataaacaaaagaatcatagaactgtgt |
396 |
Q |
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| T |
1146 |
aaaaataaacacaatcatgtagaaaatactcaacaccttcataaacaaaagaatcatagaactgtgt |
1080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 151 - 396
Target Start/End: Complemental strand, 26372374 - 26372129
Alignment:
| Q |
151 |
aagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactccgaatttccgaaggacgaaagaaccaaaca |
250 |
Q |
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| T |
26372374 |
aagaccctttcccttcccagaagccaagaacagctcattccaacaaggcttataacctctatgaaaattacgaatttcagaaggacgaaaaaaccaaaca |
26372275 |
T |
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| Q |
251 |
actctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggtaaaaataaacacaatcatgta |
350 |
Q |
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| T |
26372274 |
actcttatcatctttgcacgactagtctcgtacatcttgacaagcttaccaatggaagtttcaacatgatcggtgtggtaaaaataaacagaatcataca |
26372175 |
T |
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| Q |
351 |
gaaaatactcaacaccttcataaacaaaagaatcatagaactgtgt |
396 |
Q |
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| T |
26372174 |
gaaaatactcaacaccatcataaacaaaagaatcataaaactgtgt |
26372129 |
T |
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