View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_52 (Length: 395)
Name: NF1111_high_52
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_52 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 16910669 - 16910985
Alignment:
| Q |
1 |
tggggtgtccgttggatgatgaaaattccaacttccttggaattgcctgctttgaaaagcttgcatcttatctctgtcacttttgttgcaaatgataatg |
100 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
16910669 |
tggggtgtcccttggatgatgaaaattccaacttccttggaattgcctgctttgaaaagcttgcatcttatctctgccacttttgttgcaaatgacaatg |
16910768 |
T |
|
| Q |
101 |
gcattgtggaacccttttcaaattttaagatgttaagcaccttggttcttgactgttggtgtctacaacacaatgcaactgtcctctgcatatctaattc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
16910769 |
gcattgtggaacccttttcaaattttaagatgttaagcactttggtccttaactgttggtctctacaacacaatgcaactgtcctctgcatatctaattc |
16910868 |
T |
|
| Q |
201 |
caagctatatagtttgtccataggttttaccgctccggaacgttacaaagttgtgctttctactccaaaccttaattctatatctctaacacgtggtctc |
300 |
Q |
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|||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
16910869 |
caagctatctagtttgtgcataggttgtacccctccggaacgttacaaagttgtgctttctactccaaaccttaattctatctctctctttcgtggtctc |
16910968 |
T |
|
| Q |
301 |
gttcaccaagtctctgc |
317 |
Q |
| |
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||||| ||| ||||||| |
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| T |
16910969 |
gttcatcaattctctgc |
16910985 |
T |
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