View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_64 (Length: 375)
Name: NF1111_high_64
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_64 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 30 - 361
Target Start/End: Complemental strand, 40211334 - 40211004
Alignment:
| Q |
30 |
attttttgttctcatttttcaaatatataacgtgcataatataatttgtcaaatgaatttcaattttcaaacacaaacacaatcaatgatgctatgatat |
129 |
Q |
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| T |
40211334 |
attttttgttctcatttttcaaatatataatgtgcataatataatttgtcaattgaatt-caattttcaaacacaaacacaatcaatgatgctatgatat |
40211236 |
T |
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| Q |
130 |
ggctaagaaagaaccacgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttgcttctgtaagatgagaaggacctttttgatgg |
229 |
Q |
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| T |
40211235 |
ggctaagaaagaaccacgtgttgtacatttgtaggccaattttatgttgaataagaattctatgtttgcttctgtaagatgagaaggacctttttgatgg |
40211136 |
T |
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| Q |
230 |
tcggtgtagtttttaattaaatgttataatttctgatttcattagcttatctttgcactttcagctgaaggttttttcttgttggcttatgatgaaattg |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40211135 |
tcggtgtagtttttaattaaatgttataatttctgatttcattagcttatctttgcactttcagctgaaggttttttcttgttggcttatgatgaaattg |
40211036 |
T |
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| Q |
330 |
tatgcttattgcttattctgacttggactgcc |
361 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40211035 |
tatgcttattgcttattctgacttggactgcc |
40211004 |
T |
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