View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_65 (Length: 372)
Name: NF1111_high_65
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_65 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 78 - 343
Target Start/End: Complemental strand, 51496501 - 51496236
Alignment:
| Q |
78 |
ctccaataatataaagattgattcctcatatcagagcaacaatactagattaatcactaccatgcgagcacgatgataagctattataaaaaatattgaa |
177 |
Q |
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| T |
51496501 |
ctccattaatataaagattgattcctcctatcagagcaacaatattagattaatcactaccatgcgagcacgatgataagctattataaaatatattgaa |
51496402 |
T |
|
| Q |
178 |
acaagaaaatacagtcaagattccacacaaggtcttcatcattcacataaatcataaagtattcaattccatacatacataccctcgtccacatcaacag |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51496401 |
acaagaaaatacagtcaagattccacacaaggtcttcatcattcacataaatcataaagtattcaattccatacatacataccctcgtccacatcaacag |
51496302 |
T |
|
| Q |
278 |
caacaacaagtttctcagacaaacgatcacgaaaacaacgaggcgtggtagaacttccatctaacc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
51496301 |
caacaacaagtttctcagacaaacgatcacgaaaacaacaaggcgtggtagaacttccatttaacc |
51496236 |
T |
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