View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_high_71 (Length: 363)
Name: NF1111_high_71
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_71 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 27105369 - 27105718
Alignment:
| Q |
1 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105369 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
27105468 |
T |
|
| Q |
101 |
tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105469 |
tccttcaacttgcgtctaataccagctacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg |
27105568 |
T |
|
| Q |
201 |
caattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatattt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27105569 |
caattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatattt |
27105668 |
T |
|
| Q |
301 |
cttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacag |
350 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27105669 |
cttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacag |
27105718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 27098370 - 27098719
Alignment:
| Q |
1 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
27098370 |
aatttcatagagtggcctttcatcgagctcactaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggatcaaaa |
27098469 |
T |
|
| Q |
101 |
tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg |
200 |
Q |
| |
|
|||||||| |||||||||||||| | ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
27098470 |
tccttcaagttgcgtctaatacctgctacaatggtcagtactgtttcaccattgctgttaagttttaaggctcttgctcttgatctccaaacataacctg |
27098569 |
T |
|
| Q |
201 |
caattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatattt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||| ||||||||| || | |||||||||||||| |
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|
| T |
27098570 |
caattgattcaaaagttgtgaaccttatatttccactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaatattg |
27098669 |
T |
|
| Q |
301 |
cttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacag |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
27098670 |
cttcataactgtagtgttgtgttgattcagaaaaggtgaaaatgcaacag |
27098719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 65 - 299
Target Start/End: Original strand, 27085768 - 27086002
Alignment:
| Q |
65 |
gaattcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagtt |
164 |
Q |
| |
|
|||||||||||||| || |||||||||| ||| ||||||| || ||||||||| ||||| | ||||||| | | ||||| ||||||| | ||||||| |
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|
| T |
27085768 |
gaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaactgcaatggttagcgctgttaaaccattgcttttaagtt |
27085867 |
T |
|
| Q |
165 |
ttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctt |
264 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| | || |||| |||||||||||||||||||| | |
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|
| T |
27085868 |
ttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttatattttcattttcattcatcaaactcaacttaagtct |
27085967 |
T |
|
| Q |
265 |
tgttaacatttcaccctccacattaaaacaatatt |
299 |
Q |
| |
|
| ||| |||||||||||| || ||||||||||||| |
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|
| T |
27085968 |
tcttatcatttcaccctctactttaaaacaatatt |
27086002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27056539 - 27056765
Alignment:
| Q |
1 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
100 |
Q |
| |
|
|||||||||||||||| |||| | |||||| || |||||||| ||| ||| |||| | | ||||| ||||| || || |||||||||| ||| || |
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|
| T |
27056539 |
aatttcatagagtggcatttcgttgagctcactcacttttaaaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataa |
27056638 |
T |
|
| Q |
101 |
tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg |
200 |
Q |
| |
|
|||| ||| ||||||||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||| |
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|
| T |
27056639 |
tcctccaagttgcgtctaataccaactgcaatggtcagcactgtttcaccattgctgttaagttttaaggctcttgctcttgacctctacacataacctg |
27056738 |
T |
|
| Q |
201 |
caattgattcaaaagttgtgaaccttat |
228 |
Q |
| |
|
||| | | |||||||||||||||||||| |
|
|
| T |
27056739 |
caagt-actcaaaagttgtgaaccttat |
27056765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 129 - 299
Target Start/End: Original strand, 27041354 - 27041524
Alignment:
| Q |
129 |
caatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttat |
228 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| || |
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|
| T |
27041354 |
caatggtcaacactgtttcaccattgctgttaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaacctcat |
27041453 |
T |
|
| Q |
229 |
acctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatt |
299 |
Q |
| |
|
| || ||| |||||||||||||| ||||| ||||| |||||||||||| || ||||||||||||| |
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|
| T |
27041454 |
tttttcatttttattcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatatt |
27041524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 27069648 - 27069997
Alignment:
| Q |
1 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || |||||||| ||| |||||||| | |||||||| ||||| || || ||||||| |||||| |
|
|
| T |
27069648 |
aatttcatagagtggcatttcatcgagctcactcacttttaaaacaacttttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaa |
27069747 |
T |
|
| Q |
101 |
tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataacctg |
200 |
Q |
| |
|
||| |||| || ||||| |||||| || || ||| || ||||| | ||||| || |||| |||||||||||||||||||| |||||||||||||||| |
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|
| T |
27069748 |
tccatcaagttacgtctcataccaactaacatattcagcattgttttatcattgctgctaagctttaaggctcttgctcttgacctccacacataacctg |
27069847 |
T |
|
| Q |
201 |
caattgattcaaaagttgtgaaccttatacctccactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatattt |
300 |
Q |
| |
|
||| |||||||||||| |||| ||| | |||||| |||||||||||||||||||| |||||| | |||| ||||| || |||||| |||||| |
|
|
| T |
27069848 |
caagaacttcaaaagttgtaaaccctattttttcacttttattcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattg |
27069947 |
T |
|
| Q |
301 |
cttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaacag |
350 |
Q |
| |
|
||| |||| |||||| || |||||||| ||| |||||||||||||||| |
|
|
| T |
27069948 |
cttaataattgtagtattagtttgattcacaaagggtgaaaatgcaacag |
27069997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 150 - 350
Target Start/End: Original strand, 27062730 - 27062924
Alignment:
| Q |
150 |
cattgttgttaagttttaaggctcttgctcttgatctccacacataacctgcaattgattcaaaagttgtgaaccttatacctccactttccttcatcaa |
249 |
Q |
| |
|
||||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | |||| |||||||| |
|
|
| T |
27062730 |
cattgctgctaagttttaaggctcttgctcttgacctccacacataacctgcaagcacttcaaaagttgtgaaccttat------attttcgttcatcaa |
27062823 |
T |
|
| Q |
250 |
actcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaaatgcaaca |
349 |
Q |
| |
|
|||||||||||| |||||| | |||| ||||| || ||||||||||||| ||| |||| | |||| || |||||||| ||| ||||||||||||||| |
|
|
| T |
27062824 |
actcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaagggtgaaaatgcaaca |
27062923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 27045639 - 27045834
Alignment:
| Q |
1 |
aatttcatagagtggcctttcatcgagctcgctaacttttaacacagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaa |
100 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||||||||||| ||| |||| ||| | ||| |||||||| || |||| ||||| ||| || |
|
|
| T |
27045639 |
aatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataa |
27045738 |
T |
|
| Q |
101 |
tccttcaacttgcgtctaataccagttacaatggtcaacactgtttcaccattgttgttaagttttaaggctcttgctcttgatctccacacataa |
196 |
Q |
| |
|
| |||| |||||||||||||| || || |||||| ||||| ||||||||| |||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
27045739 |
cctttcatgctgcgtctaataccaactaacatattcaacattgtttttccattgttgctaagttgtaaggctcttgctcttgacctccacacataa |
27045834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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