View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_73 (Length: 361)

Name: NF1111_high_73
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_73
NF1111_high_73
[»] chr5 (5 HSPs)
chr5 (182-320)||(2937999-2938137)
chr5 (28-141)||(2938178-2938291)
chr5 (234-274)||(8121452-8121492)
chr5 (235-299)||(11911937-11912000)
chr5 (234-306)||(15368136-15368207)
[»] chr7 (1 HSPs)
chr7 (261-324)||(45004905-45004967)
[»] chr3 (3 HSPs)
chr3 (233-303)||(40339077-40339146)
chr3 (228-303)||(3845236-3845310)
chr3 (251-303)||(52925735-52925786)
[»] chr8 (1 HSPs)
chr8 (233-300)||(4554226-4554292)
[»] chr2 (2 HSPs)
chr2 (228-303)||(37561594-37561668)
chr2 (251-303)||(1976989-1977040)
[»] chr6 (1 HSPs)
chr6 (233-303)||(578822-578891)
[»] chr4 (1 HSPs)
chr4 (233-309)||(2635055-2635130)


Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 2938137 - 2937999
Alignment:
Q  182 tccacttgcatccatttgcttttatatagaatcatccaaaaccataacttggtgtatgtttggtttttattttggaggagccaaaattgattgtagagga 281  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2938137 tccacttgcatccatttgcttttatatagaatcatccaaaaccataacttggtgtatgtttggtttttattttggaggagccaaaattgattctagagga 2938038  T
Q  282 gtaaaaattgattttgacatgtatgattactctctagta 320  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2938037 gtaaaaattgattttgacatgtatgattactctctagta 2937999  T

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Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 2938291 - 2938178
Alignment:
Q  28 cacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgtgtctgaacataaaactcttcaggcttataaggaacatcc 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2938291 cacagctcacctctcgcatatcttcacaacatttgcaccagcatctggctcacattttcgcgtctgaacataaaactcttcaggcttataaggaacatcc 2938192  T
Q  128 tacaaagaagccac 141  Q
    ||||||||||||||    
T  2938191 tacaaagaagccac 2938178  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 8121452 - 8121492
Alignment:
Q  234 tgtatgtttggtttttattttggaggagccaaaattgattg 274  Q
    ||||||||||||| | ||||||||||| |||||||||||||    
T  8121452 tgtatgtttggttctaattttggaggacccaaaattgattg 8121492  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 299
Target Start/End: Complemental strand, 11912000 - 11911937
Alignment:
Q  235 gtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgac 299  Q
    |||||||||||||| ||||||| || | ||||||||||| |||||  || |||||||||||||||    
T  11912000 gtatgtttggttttaattttggtggggtcaaaattgattctagagatgt-aaaattgattttgac 11911937  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 15368136 - 15368207
Alignment:
Q  234 tgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgtatg 306  Q
    |||||||||||||    ||||||||||||||||||||||| ||||   || | ||||||||||||||||||||    
T  15368136 tgtatgtttggttccacttttggaggagccaaaattgattctagatatgt-agaattgattttgacatgtatg 15368207  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 324
Target Start/End: Original strand, 45004905 - 45004967
Alignment:
Q  261 gccaaaattgattgtagaggagtaaaaattgattttgacatgtatgattactctctagtataat 324  Q
    ||||||||||||| |||||| ||| || ||||||||||||||| || |||||||||||||||||    
T  45004905 gccaaaattgattctagaggtgtagaa-ttgattttgacatgtttggttactctctagtataat 45004967  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 40339077 - 40339146
Alignment:
Q  233 gtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    |||||||||||||||   ||||||| | ||||||||||||| ||||||||| | |||||||||||||||||    
T  40339077 gtgtatgtttggtttaacttttggaagggccaaaattgattttagaggagt-ataattgattttgacatgt 40339146  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Complemental strand, 3845310 - 3845236
Alignment:
Q  228 acttggtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    |||||||||||||||||||    |||||||| | |||||||||||| |||||| || | |||||||||||||||||    
T  3845310 acttggtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgt-agaattgattttgacatgt 3845236  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 52925786 - 52925735
Alignment:
Q  251 ttttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    ||||||||||| ||||||||||| |||||| || | |||||||||||||||||    
T  52925786 ttttggaggagtcaaaattgattctagaggtgt-ataattgattttgacatgt 52925735  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 4554226 - 4554292
Alignment:
Q  233 gtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgaca 300  Q
    ||||||||||||||   |||||||| ||||| ||||||||| |||||| || ||||||||||||||||    
T  4554226 gtgtatgtttggttcaaattttggatgagcctaaattgattctagaggtgt-aaaattgattttgaca 4554292  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 228 - 303
Target Start/End: Original strand, 37561594 - 37561668
Alignment:
Q  228 acttggtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    |||| |||||||||||||||  |||||||| ||| |  |||||||| |||||| || |||||||||||||||||||    
T  37561594 actttgtgtatgtttggtttcaattttggatgaggcggaattgattctagaggtgt-aaaattgattttgacatgt 37561668  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 303
Target Start/End: Complemental strand, 1977040 - 1976989
Alignment:
Q  251 ttttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||||||||||||    
T  1977040 ttttggaggagccaaaattgattctagagg-tttgaaattgattttgacatgt 1976989  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 578822 - 578891
Alignment:
Q  233 gtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgt 303  Q
    |||||||||||||||  | |||||| | | ||| ||||||| ||||||||| |||||||||||||||||||    
T  578822 gtgtatgtttggtttcaagtttggaagggacaagattgattttagaggagt-aaaattgattttgacatgt 578891  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 2635055 - 2635130
Alignment:
Q  233 gtgtatgtttggtttttattttggaggagccaaaattgattgtagaggagtaaaaattgattttgacatgtatgatt 309  Q
    |||||||||||||||   |||| ||||  |||||||||||| |||| | |||||| ||||||||||||||| |||||    
T  2635055 gtgtatgtttggtttcacttttagagggaccaaaattgattctagaagtgtaaaa-ttgattttgacatgtttgatt 2635130  T

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