View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_76 (Length: 357)
Name: NF1111_high_76
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 7e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 39 - 188
Target Start/End: Complemental strand, 9870976 - 9870827
Alignment:
| Q |
39 |
aataaaaaccatgtaggtcgaaattgaaatcgacatatctaaaagaatatagtaggaatcattttgctttgttgatgtaatttacagttcacatttatat |
138 |
Q |
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| T |
9870976 |
aataaaaaccatgtaggtcgaaattgaaatcgacatgtctaaaagaatatagtaggaatcattttgctttgttgatgtaatttacagttcacatttatat |
9870877 |
T |
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| Q |
139 |
tcgcatgataatctacggtcatacgtaagaactagcagtaggaacataaa |
188 |
Q |
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| T |
9870876 |
tcgcatgataatctacggtcatacgtaagaactagcagtaggaacataaa |
9870827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 244 - 344
Target Start/End: Complemental strand, 9870770 - 9870670
Alignment:
| Q |
244 |
gcatgtaccctgattgtacttatctaaactctctttctccaaggaaaaattagaagtttataccatgttaattatgttttaaaaacaataaatgttaata |
343 |
Q |
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| T |
9870770 |
gcatgtaccctgattgtacttatctaaactctctttctccaaggaaaaattagaagtttataccatgttaattatgttttaaaaacggtaaatgttaata |
9870671 |
T |
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| Q |
344 |
t |
344 |
Q |
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| T |
9870670 |
t |
9870670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 186
Target Start/End: Complemental strand, 9876514 - 9876367
Alignment:
| Q |
40 |
ataaaaaccatgtaggtcgaaattgaaatcgacatatctaaaagaatatagtaggaatcattttg-ctttgttgatgtaatttacagttcacatttatat |
138 |
Q |
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|||||| ||||||||||| | |||||||| ||||| ||||||||| ||||||||||||||||||| ||||||| |||||||| ||||||||||| ||| |
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| T |
9876514 |
ataaaatccatgtaggtccatattgaaatggacatgtctaaaagattatagtaggaatcattttgcctttgttagtgtaatttggagttcacatttttat |
9876415 |
T |
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| Q |
139 |
tcgcatgataatctacggtcatacgtaagaactagcagtaggaacata |
186 |
Q |
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| T |
9876414 |
gcgcatgatgatatagtgtcataggtaagtactggcattaggaacata |
9876367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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