View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_78 (Length: 356)

Name: NF1111_high_78
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_78
NF1111_high_78
[»] chr4 (25 HSPs)
chr4 (28-356)||(20093391-20093719)
chr4 (28-100)||(29669651-29669723)
chr4 (33-84)||(22865833-22865884)
chr4 (28-86)||(990606-990664)
chr4 (28-86)||(56511356-56511414)
chr4 (28-100)||(45427225-45427297)
chr4 (28-83)||(45426926-45426981)
chr4 (33-100)||(50858076-50858143)
chr4 (28-86)||(9938508-9938566)
chr4 (178-216)||(20093338-20093376)
chr4 (33-67)||(39910422-39910456)
chr4 (33-86)||(10390462-10390515)
chr4 (117-158)||(32973228-32973269)
chr4 (35-84)||(32987460-32987509)
chr4 (28-85)||(56511563-56511620)
chr4 (28-84)||(991263-991319)
chr4 (118-158)||(25669898-25669938)
chr4 (28-100)||(27048381-27048453)
chr4 (28-84)||(29669352-29669408)
chr4 (28-84)||(36558455-36558511)
chr4 (28-100)||(51469540-51469612)
chr4 (33-85)||(51470547-51470599)
chr4 (28-84)||(52214674-52214730)
chr4 (28-84)||(53740241-53740297)
chr4 (28-84)||(53863964-53864020)
[»] chr5 (17 HSPs)
chr5 (28-84)||(13844072-13844128)
chr5 (28-158)||(2716402-2716531)
chr5 (28-100)||(27760134-27760206)
chr5 (33-100)||(13843761-13843828)
chr5 (31-86)||(40169028-40169083)
chr5 (48-86)||(4465172-4465210)
chr5 (109-158)||(2721893-2721942)
chr5 (33-86)||(2908756-2908809)
chr5 (28-85)||(12965234-12965291)
chr5 (33-86)||(13413648-13413701)
chr5 (33-86)||(24125126-24125179)
chr5 (33-86)||(34457160-34457213)
chr5 (31-84)||(34457365-34457418)
chr5 (34-86)||(3762971-3763023)
chr5 (28-84)||(24994128-24994184)
chr5 (33-85)||(38131828-38131880)
chr5 (32-72)||(38658504-38658544)
[»] chr8 (16 HSPs)
chr8 (28-86)||(22277583-22277641)
chr8 (33-86)||(15011016-15011069)
chr8 (33-86)||(20760647-20760700)
chr8 (28-100)||(21653386-21653458)
chr8 (33-86)||(10989228-10989281)
chr8 (28-85)||(18905915-18905972)
chr8 (33-86)||(33435743-33435796)
chr8 (28-85)||(36997225-36997282)
chr8 (33-86)||(43599375-43599428)
chr8 (47-100)||(43984289-43984342)
chr8 (28-100)||(7621953-7622025)
chr8 (33-85)||(10989022-10989074)
chr8 (33-85)||(16454623-16454675)
chr8 (28-84)||(22451407-22451463)
chr8 (28-84)||(30066041-30066097)
chr8 (28-84)||(32931460-32931516)
[»] chr7 (10 HSPs)
chr7 (28-84)||(34590587-34590643)
chr7 (47-158)||(40137613-40137722)
chr7 (33-84)||(43167882-43167933)
chr7 (28-86)||(16564953-16565011)
chr7 (28-86)||(16600651-16600709)
chr7 (28-85)||(1663592-1663649)
chr7 (33-86)||(23396673-23396726)
chr7 (33-86)||(33855549-33855602)
chr7 (28-84)||(28910091-28910147)
chr7 (28-84)||(33855750-33855806)
[»] chr3 (22 HSPs)
chr3 (28-84)||(50203846-50203902)
chr3 (28-86)||(35011716-35011774)
chr3 (31-92)||(10758989-10759050)
chr3 (33-86)||(37058758-37058811)
chr3 (28-84)||(35011923-35011979)
chr3 (28-84)||(43101360-43101416)
chr3 (28-100)||(44573698-44573770)
chr3 (33-96)||(40230616-40230679)
chr3 (34-84)||(4029633-4029683)
chr3 (28-86)||(22407635-22407693)
chr3 (47-100)||(4255997-4256050)
chr3 (33-86)||(9264280-9264333)
chr3 (33-86)||(19820515-19820568)
chr3 (33-86)||(33909617-33909670)
chr3 (240-281)||(40765935-40765975)
chr3 (47-100)||(44573404-44573457)
chr3 (33-86)||(50692387-50692440)
chr3 (33-86)||(51642622-51642675)
chr3 (33-85)||(9264074-9264126)
chr3 (28-84)||(22407430-22407486)
chr3 (28-84)||(34715444-34715500)
chr3 (28-84)||(44573995-44574051)
[»] chr2 (13 HSPs)
chr2 (28-100)||(21214174-21214246)
chr2 (28-84)||(6183355-6183411)
chr2 (34-86)||(22447165-22447217)
chr2 (118-173)||(7706277-7706332)
chr2 (33-84)||(39108419-39108470)
chr2 (31-86)||(41002295-41002350)
chr2 (33-86)||(3435473-3435526)
chr2 (33-86)||(31761196-31761249)
chr2 (28-100)||(3976444-3976516)
chr2 (28-84)||(5424771-5424827)
chr2 (28-84)||(23054385-23054441)
chr2 (28-84)||(42768323-42768379)
chr2 (28-84)||(43195843-43195899)
[»] chr1 (16 HSPs)
chr1 (28-84)||(37600931-37600987)
chr1 (28-84)||(45264721-45264777)
chr1 (28-100)||(20735581-20735653)
chr1 (33-96)||(25799248-25799311)
chr1 (33-84)||(48558310-48558361)
chr1 (33-84)||(52846838-52846889)
chr1 (28-85)||(17419846-17419903)
chr1 (31-84)||(20428963-20429016)
chr1 (28-85)||(20735814-20735871)
chr1 (33-86)||(29273053-29273106)
chr1 (33-86)||(29273212-29273265)
chr1 (33-82)||(33342269-33342318)
chr1 (33-86)||(43361744-43361797)
chr1 (28-84)||(19696684-19696740)
chr1 (33-85)||(39649072-39649124)
chr1 (28-84)||(41812647-41812703)
[»] chr6 (11 HSPs)
chr6 (28-85)||(22875126-22875183)
chr6 (28-84)||(19054552-19054608)
chr6 (33-92)||(19291899-19291958)
chr6 (28-86)||(26098401-26098459)
chr6 (33-86)||(16876997-16877050)
chr6 (28-85)||(22911478-22911535)
chr6 (28-84)||(1744831-1744887)
chr6 (36-84)||(12134472-12134520)
chr6 (28-84)||(24055098-24055154)
chr6 (28-84)||(25999082-25999138)
chr6 (28-84)||(26098813-26098869)
[»] scaffold0054 (1 HSPs)
scaffold0054 (28-85)||(11331-11388)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 28 - 356
Target Start/End: Original strand, 20093391 - 20093719
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctatagattggaccactcatcatttatatac 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||||||| |||||||| ||||||||||    
T  20093391 cacttctcaccttataaatcggttttgtaaggatgagttaatctctaaattttaacatgacatcagagcttatagattgggccactcattatttatatac 20093490  T
Q  128 acgcatcaagcccaataatgctgggtgtgagagttgtattgagaaaaatacaagttttacatcagataaataaaactcttgataagaatgacaatcctca 227  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||| ||||||    
T  20093491 acgcatcaagcccaataatgttgggtgtgagaggtgtattgagaaaaatacaaattttacatcagatagataaaactcttgataaaaatgacactcctca 20093590  T
Q  228 ctttatagatcaattttgtagaattgtgttaggctcaaccataaatttttaagaataaatataaagagataagtaactcagaaattaaatgggaaagaat 327  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20093591 ctttatagatcaattttatagaattgtgttaggctcaaccataaatttttaagaataaatataaagagataagtaactcagaaattaaatgggaaagaat 20093690  T
Q  328 ggacggggaatggggaatcagtgagagac 356  Q
    |||| ||||||||||||||||||||||||    
T  20093691 ggacagggaatggggaatcagtgagagac 20093719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 29669723 - 29669651
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||| ||| |||||||||||||  |||| |||||||    
T  29669723 cactcctcaccttacaagccggttttgtaaggatgagttaaaccccaaatttcaacatggtatcagagcctat 29669651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 22865833 - 22865884
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||| || |||||||||||||||||||||  |||||||||||||||    
T  22865833 ctcaccttatgaaccggttttgtaaggatgagttagaccctaaatttcaaca 22865884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 990606 - 990664
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| ||||||||| || ||||||||||||||||||||||  ||| |||||||||||||    
T  990606 cactcctcaccttacaagtcggttttgtaaggatgagttaggccccaaatttcaacatg 990664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 56511356 - 56511414
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  56511356 cactcctcaccttatgaaccggttttgtaaggatgagttaggccccaaatttcaacatg 56511414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 45427297 - 45427225
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  45427297 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 45427225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 45426981 - 45426926
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaac 83  Q
    |||| ||||||||| || ||||||||||||||||||||||  ||| ||||||||||    
T  45426981 cactcctcaccttacaagtcggttttgtaaggatgagttaggccccaaatttcaac 45426926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 50858076 - 50858143
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||| |  ||||||||||||    
T  50858076 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacacggtatcaaagcctat 50858143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 9938508 - 9938566
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||||||||||| || ||||||||||||| |||||  | | |||||||||||||    
T  9938508 cacttctcaccttataagtcagttttgtaaggataagttagacgcaaaatttcaacatg 9938566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 20093338 - 20093376
Alignment:
Q  178 caagttttacatcagataaataaaactcttgataagaat 216  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  20093338 caagtcttacatcagataaataagactcttgataagaat 20093376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 39910456 - 39910422
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagtta 67  Q
    |||||||||||||||| ||||||||||||||||||    
T  39910456 ctcaccttataaatcgattttgtaaggatgagtta 39910422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 10390515 - 10390462
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||||||||| || | |||||||||||||||||||  ||| |||||||||||||    
T  10390515 ctcaccttatgaaccagttttgtaaggatgagttagaccccaaatttcaacatg 10390462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 32973228 - 32973269
Alignment:
Q  117 catttatatacacgcatcaagcccaataatgctgggtgtgag 158  Q
    ||||||||||||||||| |||||||||| ||||||| |||||    
T  32973228 catttatatacacgcatgaagcccaatagtgctgggggtgag 32973269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 32987509 - 32987460
Alignment:
Q  35 caccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    ||||||| || |||||||||||||||||| |||  |||||||||||||||    
T  32987509 caccttacaagtcggttttgtaaggatgatttaggccctaaatttcaaca 32987460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 56511563 - 56511620
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| |||||||||| || || ||||||||||||||||||  ||| ||||||||||||    
T  56511563 cactcctcaccttatgaaccgattttgtaaggatgagttaggccccaaatttcaacat 56511620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 991263 - 991319
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  991263 cactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 991319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 25669898 - 25669938
Alignment:
Q  118 atttatatacacgcatcaagcccaataatgctgggtgtgag 158  Q
    ||||||||||||||| ||||||||||| ||||||| |||||    
T  25669898 atttatatacacgcaccaagcccaatagtgctgggcgtgag 25669938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 27048453 - 27048381
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||   || |||||||||||||  |||| |||||||    
T  27048453 cactcctcaccttacaagccggttttgtaaggatgagttaggtcccaaatttcaacatggtatcagagcctat 27048381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 29669408 - 29669352
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  29669408 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29669352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 36558511 - 36558455
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  36558511 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36558455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 51469540 - 51469612
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  ||||| |||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  51469540 cactcctcaccttacaagccggttgtgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 51469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 51470547 - 51470599
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  51470547 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 51470599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 52214674 - 52214730
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  52214674 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 52214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 53740241 - 53740297
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  53740241 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 53740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 53863964 - 53864020
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||||||||||||  ||  |||||||||||    
T  53863964 cactcctcaccttatgaaccggttttgtaaggatgagttagaccacaaatttcaaca 53864020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 13844072 - 13844128
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||||||| ||| |||||||||||||||||||||  |||||||||||||||    
T  13844072 cacttctcaccttacaaaacggttttgtaaggatgagttaggccctaaatttcaaca 13844128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 158
Target Start/End: Original strand, 2716402 - 2716531
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctatagattggaccactcatcatttatatac 127  Q
    |||| ||||||||||||   ||||||||||||||||||||  |||  ||||||||||||  |||| || |||| ||| || |||| || || ||||||||    
T  2716402 cactcctcaccttataagctggttttgtaaggatgagttaggccc-caatttcaacatggtatcagaggctatcgatcgggccacccaccagttatatac 2716500  T
Q  128 acgcatcaagcccaataatgctgggtgtgag 158  Q
    | ||| ||||||| ||| ||||||| |||||    
T  2716501 atgcaccaagccccatagtgctgggcgtgag 2716531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 27760134 - 27760206
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  ||||||||||||| |||||||| ||  |||||||||||||  ||||||||||||    
T  27760134 cactcctcaccttacaagccggttttgtaaggttgagttaagcctcaaatttcaacatggtatcaaagcctat 27760206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 13843761 - 13843828
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  13843761 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 13843828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 40169083 - 40169028
Alignment:
Q  31 ttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  40169083 ttctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 40169028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 4465210 - 4465172
Alignment:
Q  48 ggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||||||||||||||| ||| |||||||||||||    
T  4465210 ggttttgtaaggatgagttaagccccaaatttcaacatg 4465172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 158
Target Start/End: Original strand, 2721893 - 2721942
Alignment:
Q  109 ccactcatcatttatatacacgcatcaagcccaataatgctgggtgtgag 158  Q
    |||| ||||||||||||| ||||||||||||||| | |||| ||||||||    
T  2721893 ccacccatcatttatataaacgcatcaagcccaacagtgcttggtgtgag 2721942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 2908809 - 2908756
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  2908809 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 2908756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 12965291 - 12965234
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  12965291 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 12965234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 13413648 - 13413701
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  13413648 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 13413701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 24125126 - 24125179
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  24125126 ctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacatg 24125179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 34457160 - 34457213
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  34457160 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 34457213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 34457365 - 34457418
Alignment:
Q  31 ttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    ||||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  34457365 ttctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 34457418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 3762971 - 3763023
Alignment:
Q  34 tcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  3762971 tcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 3763023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 24994128 - 24994184
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  24994128 cactactcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 38131828 - 38131880
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  38131828 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 38131880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 38658544 - 38658504
Alignment:
Q  32 tctcaccttataaatcggttttgtaaggatgagttaatccc 72  Q
    |||||||||| ||| ||||||||||||||||||||| ||||    
T  38658544 tctcaccttacaaaccggttttgtaaggatgagttagtccc 38658504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 22277583 - 22277641
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| ||||||||| ||  |||||||||||||||||||||||||| |||||||||||||    
T  22277583 cactactcaccttacaagccggttttgtaaggatgagttaatccccaaatttcaacatg 22277641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 15011069 - 15011016
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||| ||| |||||||||||||    
T  15011069 ctcaccttacaagccggttttgtaaggatgagttaagccccaaatttcaacatg 15011016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 20760700 - 20760647
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||| |||||||||||||||||||||  ||| |||||||||||||    
T  20760700 ctcaccttacaaaccggttttgtaaggatgagttaggccccaaatttcaacatg 20760647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 21653386 - 21653458
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||||||||||||| ||  |||||||||||||||||||||  | | |||||||||||||  |||| |||||||    
T  21653386 cacttctcaccttacaagccggttttgtaaggatgagttaggctccaaatttcaacatggtatcagagcctat 21653458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 10989281 - 10989228
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  10989281 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 10989228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 18905915 - 18905972
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  18905915 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 18905972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 33435743 - 33435796
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||| || ||||||||||||||||||||||  ||| |||||||||||||    
T  33435743 ctcatcttacaagtcggttttgtaaggatgagttagaccccaaatttcaacatg 33435796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 36997225 - 36997282
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  36997225 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 36997282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 43599375 - 43599428
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  43599375 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 43599428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 43984342 - 43984289
Alignment:
Q  47 cggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  43984342 cggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 43984289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 7621953 - 7622025
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||| |||||||| | | ||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  7621953 cactcctctccttataagttgattttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 7622025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 10989074 - 10989022
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  10989074 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 10989022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 16454675 - 16454623
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  16454675 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 16454623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 22451407 - 22451463
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||||| | ||  |||||||||||||||||||||  ||| |||||||||||    
T  22451407 cacttctcacctcacaagccggttttgtaaggatgagttatgccccaaatttcaaca 22451463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 30066041 - 30066097
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| ||  ||||||||||||||||||||  ||| |||||||||||    
T  30066041 cactcctcaccttatgaactggttttgtaaggatgagttaggccccaaatttcaaca 30066097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 32931460 - 32931516
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  32931460 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 32931516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 34590587 - 34590643
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||||||||||||| ||| |||||||||||    
T  34590587 cactcctcaccttatgaaccggttttgtaaggatgagttaagccccaaatttcaaca 34590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 158
Target Start/End: Complemental strand, 40137722 - 40137613
Alignment:
Q  47 cggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctatagattggaccactcatcatttatatacacgcatcaagcccaataat 146  Q
    |||||||||||||||||||||  ||| |  ||||||||||  || | ||||||| ||| || |||| || ||||||||||| | || ||||||||||| |    
T  40137722 cggttttgtaaggatgagttaggcccga--tttcaacatggtattagagcctatcgatcgggccacccaccatttatatactcacaccaagcccaatagt 40137625  T
Q  147 gctgggtgtgag 158  Q
    ||||| ||||||    
T  40137624 gctggatgtgag 40137613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 43167933 - 43167882
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||| |  |||||||||||||||||||||| ||| |||||||||||    
T  43167933 ctcaccttatgagccggttttgtaaggatgagttaagccccaaatttcaaca 43167882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 16564953 - 16565011
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||||||||| || ||||||| |||||||||||||  || ||||||||||||||    
T  16564953 cactcctcaccttatgaaccggttttttaaggatgagttaggccttaaatttcaacatg 16565011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 16600709 - 16600651
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||||||||| || ||||||| |||||||||||||  || ||||||||||||||    
T  16600709 cactcctcaccttatgaaccggttttttaaggatgagttaggccttaaatttcaacatg 16600651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 1663649 - 1663592
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  1663649 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 1663592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 23396673 - 23396726
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  23396673 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 23396726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 33855549 - 33855602
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||||||||| || || ||||||||||||||||||  ||| |||||||||||||    
T  33855549 ctcaccttatgaaccgcttttgtaaggatgagttaggccccaaatttcaacatg 33855602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 28910091 - 28910147
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  28910091 cactcctcaccttacaagccggttttgtaaggatgagttagcccccaaatttcaaca 28910147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 33855750 - 33855806
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||| ||||||||  ||| |||||||||||    
T  33855750 cactcctcaccttatgaaccggttttgtaagaatgagttaggccccaaatttcaaca 33855806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 50203902 - 50203846
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||||||| |||||||||||||||||||||  ||| |||||||||||    
T  50203902 cactcctcaccttataaaccggttttgtaaggatgagttaggccccaaatttcaaca 50203846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 35011716 - 35011774
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  35011716 cactcctcaccttatgaaccggttttgtaaggatgagttaggccccaaatttcaacatg 35011774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 10759050 - 10758989
Alignment:
Q  31 ttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatca 92  Q
    ||||||||| | || ||||||||||||||||||||||  ||| |||||||||||||| ||||    
T  10759050 ttctcacctcacaagtcggttttgtaaggatgagttagaccccaaatttcaacatgatatca 10758989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 37058811 - 37058758
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||| |||||||||||||||||||||  ||| |||||||||||||    
T  37058811 ctcaccttacaaaccggttttgtaaggatgagttaggcccaaaatttcaacatg 37058758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 35011923 - 35011979
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||||||||||||  ||| |||||||||||    
T  35011923 cactcctcaccttatgaaccggttttgtaaggatgagttaggccccaaatttcaaca 35011979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 43101416 - 43101360
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||||||||||||||||||||||||   ||| |||||||||||    
T  43101416 cactcctcaccttacaaatcggttttgtaaggatgagtttggccccaaatttcaaca 43101360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 44573698 - 44573770
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  44573698 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 44573770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 40230679 - 40230616
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagc 96  Q
    ||||||||| ||  ||||||||||||| |||||||| ||| |||||||||||||  ||||||||    
T  40230679 ctcaccttacaagccggttttgtaaggttgagttaagccccaaatttcaacatggtatcaaagc 40230616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 4029683 - 4029633
Alignment:
Q  34 tcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||| ||| |||||||||||||||||||||  ||| |||||||||||    
T  4029683 tcaccttacaaaccggttttgtaaggatgagttaggccccaaatttcaaca 4029633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 22407693 - 22407635
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  22407693 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 22407635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 4255997 - 4256050
Alignment:
Q  47 cggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||||||||||||||||||||  ||| |||||||||||||  ||||||| ||||    
T  4255997 cggttttgtaaggatgagttaggccccaaatttcaacatggtatcaaagtctat 4256050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 9264333 - 9264280
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  9264333 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 9264280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 19820568 - 19820515
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||| |||||||||||||||||||||  ||  |||||||||||||    
T  19820568 ctcaccttacaaaccggttttgtaaggatgagttaggcctcaaatttcaacatg 19820515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 33909670 - 33909617
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||  || ||||||||||||||||||||||  ||| |||||||||||||    
T  33909670 ctcaccttgcaagtcggttttgtaaggatgagttagaccccaaatttcaacatg 33909617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 40765975 - 40765935
Alignment:
Q  240 attttgtagaattgtgttaggctcaaccataaatttttaaga 281  Q
    |||||||||||||||||||||||||| ||| |||||||||||    
T  40765975 attttgtagaattgtgttaggctcaaacat-aatttttaaga 40765935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 44573404 - 44573457
Alignment:
Q  47 cggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||||||||||||||||||||  ||||| |||||||||||  |||| |||||||    
T  44573404 cggttttgtaaggatgagttaggccctagatttcaacatggtatcagagcctat 44573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 50692387 - 50692440
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  50692387 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 50692440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 51642675 - 51642622
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  51642675 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 51642622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 9264126 - 9264074
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  9264126 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacat 9264074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 22407486 - 22407430
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  22407486 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 34715500 - 34715444
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  34715500 cactcctcaccttacaagccggttttgtaaggatgagttatgccccaaatttcaaca 34715444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 44573995 - 44574051
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  44573995 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 21214246 - 21214174
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||  ||||||||||||    
T  21214246 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcaaagcctat 21214174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 6183411 - 6183355
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  6183411 cacttctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 6183355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 22447165 - 22447217
Alignment:
Q  34 tcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| || |||||||||||||||||||||  ||| |||||||||||||    
T  22447165 tcaccttatgaaccggttttgtaaggatgagttagaccccaaatttcaacatg 22447217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 7706332 - 7706277
Alignment:
Q  118 atttatatacacgcatcaagcccaataatgctgggtgtgagagttgtattgagaaa 173  Q
    |||||||||||| ||||||||||||||||| |||| ||||| | ||| ||||||||    
T  7706332 atttatatacacacatcaagcccaataatgttgggcgtgaggggtgtcttgagaaa 7706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 39108419 - 39108470
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    ||||||||||||| |||||||||||||||||||||  ||| | |||||||||    
T  39108419 ctcaccttataaaccggttttgtaaggatgagttagaccccatatttcaaca 39108470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 86
Target Start/End: Original strand, 41002295 - 41002350
Alignment:
Q  31 ttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||||||||| || |||| |||||||||||||  ||| |||||||||||||    
T  41002295 ttctcaccttataaaccgattttataaggatgagttatgccccaaatttcaacatg 41002350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 3435526 - 3435473
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||| |||||||||||||||||||||  ||| ||||| |||||||    
T  3435526 ctcaccttacaaaccggttttgtaaggatgagttaggccccaaattacaacatg 3435473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 31761196 - 31761249
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| || | ||||||||||||||||||||  ||| |||||||||||||    
T  31761196 ctcaccttacaagttggttttgtaaggatgagttaggccccaaatttcaacatg 31761249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 3976516 - 3976444
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||| |||||||  |||| |||||||    
T  3976516 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaattacaacatggtatcagagcctat 3976444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 5424827 - 5424771
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  5424827 cactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaaca 5424771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 23054385 - 23054441
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  23054385 cactcctcaccttacaagacggttttgtaaggatgagttaggccccaaatttcaaca 23054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 42768379 - 42768323
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  42768379 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 42768323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 43195843 - 43195899
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  43195843 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 43195899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 37600931 - 37600987
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||||||  |||||||||||||||||||||| ||| |||||||||||    
T  37600931 cactcctcaccttataagccggttttgtaaggatgagttaagccccaaatttcaaca 37600987  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 45264721 - 45264777
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||||||| |||||||||||    
T  45264721 cactcctcaccttacaagccggttttgtaaggatgagttaatccccaaatttcaaca 45264777  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 20735581 - 20735653
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagcctat 100  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||  |||| |||||||    
T  20735581 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatggtatcagagcctat 20735653  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 25799248 - 25799311
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatcaaagc 96  Q
    |||||||||| || | |||||||||||||||||||  ||| |||||||||||||  ||||||||    
T  25799248 ctcaccttatgaaccagttttgtaaggatgagttaggccccaaatttcaacatggtatcaaagc 25799311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 48558361 - 48558310
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    ||||||||| ||  |||||||||||||||||||||| ||| |||||||||||    
T  48558361 ctcaccttacaagccggttttgtaaggatgagttaagccccaaatttcaaca 48558310  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 52846889 - 52846838
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    ||||||||| ||  |||||||||||||||||||||| ||| |||||||||||    
T  52846889 ctcaccttacaagccggttttgtaaggatgagttaagccccaaatttcaaca 52846838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 17419846 - 17419903
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  17419846 cactcctcaccttacaagccggttttgtaaggatgagttagaccccaaatttcaacat 17419903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 20429016 - 20428963
Alignment:
Q  31 ttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||||| |||||||||||||  |||||||||  || ||||||||||||    
T  20429016 ttctcaccttatgaatcggttttgtacagatgagttaggccttaaatttcaaca 20428963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 20735814 - 20735871
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| ||  |||||||||||||||||||||| ||  ||||||||||||    
T  20735814 cactcctcaccttacaagccggttttgtaaggatgagttaagcctcaaatttcaacat 20735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 29273106 - 29273053
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  29273106 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 29273053  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 29273265 - 29273212
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  29273265 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 29273212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 33342318 - 33342269
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaa 82  Q
    ||||||||| ||  |||||||||||||||||||||  |||||||||||||    
T  33342318 ctcaccttacaagccggttttgtaaggatgagttagaccctaaatttcaa 33342269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 43361797 - 43361744
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  |||| ||||||||||||    
T  43361797 ctcaccttacaagccggttttgtaaggatgagttagaccctcaatttcaacatg 43361744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 19696740 - 19696684
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||| ||||||||||||| ||| |||||||||||    
T  19696740 cactcctcaccttacaagacggttttgcaaggatgagttaagccccaaatttcaaca 19696684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 39649124 - 39649072
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    ||||||||| ||  |||||||||||||||||||||  ||| ||||||||||||    
T  39649124 ctcaccttacaagccggttttgtaaggatgagttatgccccaaatttcaacat 39649072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 41812703 - 41812647
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||||||| ||| || |||||||||| |||||||||||  ||| |||||||||||    
T  41812703 cacttctcactttacaagtcggttttgtgaggatgagttagacccgaaatttcaaca 41812647  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 22875183 - 22875126
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| |||||||||||| ||||||||||||| ||||||||  ||||||||||| ||||    
T  22875183 cactcctcaccttataagtcggttttgtaagaatgagttagaccctaaatttcgacat 22875126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 19054552 - 19054608
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  ||||||||||||||||||||| |||| |||||||||||    
T  19054552 cactcctcaccttacaagccggttttgtaaggatgagttagtccccaaatttcaaca 19054608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 92
Target Start/End: Complemental strand, 19291958 - 19291899
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatgacatca 92  Q
    |||||||||||| | ||||||||||||||||||||  | | |||||||||||||| ||||    
T  19291958 ctcaccttataagttggttttgtaaggatgagttaggctccaaatttcaacatgatatca 19291899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 26098401 - 26098459
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    |||| |||||||||| || || ||||||||||||||||||  ||| |||||||||||||    
T  26098401 cactcctcaccttatgaaccgcttttgtaaggatgagttaggccccaaatttcaacatg 26098459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 16877050 - 16876997
Alignment:
Q  33 ctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacatg 86  Q
    ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||||    
T  16877050 ctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaacatg 16876997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 22911535 - 22911478
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| || ||||||||||||| ||||||||  ||||||||||| ||||    
T  22911535 cactcctcaccttacaagtcggttttgtaagaatgagttagaccctaaatttcgacat 22911478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 1744887 - 1744831
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  1744887 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 12134520 - 12134472
Alignment:
Q  36 accttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||||| ||| |||||||||||||||||||||  ||| |||||||||||    
T  12134520 accttacaaaccggttttgtaaggatgagttaggccccaaatttcaaca 12134472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 24055154 - 24055098
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| ||||||||| ||  |||||||||||||||||||||  ||| |||||||||||    
T  24055154 cactcctcaccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24055098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 25999082 - 25999138
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||| ||||||||  ||| |||||||||||    
T  25999082 cactcctcaccttatgaaccggttttgtaagaatgagttaggccccaaatttcaaca 25999138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 26098813 - 26098869
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaaca 84  Q
    |||| |||||||||| || |||||||||||| ||||||||  ||| |||||||||||    
T  26098813 cactcctcaccttatgaaccggttttgtaagaatgagttaggccccaaatttcaaca 26098869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 11388 - 11331
Alignment:
Q  28 cacttctcaccttataaatcggttttgtaaggatgagttaatccctaaatttcaacat 85  Q
    |||| ||||||||| || ||||||||||||| ||||||||  ||||||||||| ||||    
T  11388 cactcctcaccttacaagtcggttttgtaagaatgagttagaccctaaatttcgacat 11331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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