View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1111_high_84 (Length: 345)
Name: NF1111_high_84
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_84 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 43732153 - 43732445
Alignment:
| Q |
9 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnncacgtcaattaaacttttctaaacaacggcaaaaaagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43732153 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaacacgtcaattaaacttttctaaacaacggcaaaaaagag |
43732252 |
T |
|
| Q |
109 |
caatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaattttcc |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
43732253 |
caatgtaaaggaagtgcatcaataaacaaaaacaccacagaaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaaatttcc |
43732352 |
T |
|
| Q |
209 |
tacttacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43732353 |
tacttacaaaataacaaaaacatgcaaggtcaattaaacttgtctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat |
43732445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 73 - 219
Target Start/End: Original strand, 43732067 - 43732212
Alignment:
| Q |
73 |
gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcata |
172 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| ||||| |||||| ||||||||||||||||||| || | |||| ||||||| | | || || |||| |
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|
| T |
43732067 |
gtcaattaaacttgtctaaatagcggcaaaaa-gagcattgtaaacgaagtgcatcaataaacaataaaaacacagaaactaacaaacaacaatatcata |
43732165 |
T |
|
| Q |
173 |
tgaccttcatatgtgaatcaatctaaagaattttcctacttacaaaa |
219 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||| |||||| |||| |
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|
| T |
43732166 |
tgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaa |
43732212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 43732067 - 43732118
Alignment:
| Q |
237 |
gtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc |
288 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
43732067 |
gtcaattaaacttgtctaaatagcggcaaaaagagcattgtaaacgaagtgc |
43732118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 301
Target Start/End: Original strand, 18138861 - 18139155
Alignment:
| Q |
9 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn-cacgtcaattaaacttttctaaacaacggcaaaaaaga |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
18138861 |
caacaatatcatatgactttagtatgtgaatcgatctaaaaaaatttattacttaaaaaaaacacgtcaattaaacttttctaaacagcggaaaaaaaga |
18138960 |
T |
|
| Q |
108 |
gcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaattttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
18138961 |
gcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaacgaagagcattagcatatgaccttcatatgtgaatcaatctaaagaaacttc |
18139060 |
T |
|
| Q |
208 |
ctac-ttacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat |
301 |
Q |
| |
|
|||| ||| ||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
18139061 |
ctactttaaaaaataataaaaacatgcaaggtcaatttaacttgtctaaatagcggcaaaaagagcgttgtaaacaaagtgcagtataagaaaat |
18139155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 9 - 146
Target Start/End: Complemental strand, 9071636 - 9071497
Alignment:
| Q |
9 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn--cacgtcaattaaacttttctaaacaacggcaaaaaag |
106 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
9071636 |
caacagtatcatatgaccttagtatgtgaatcgatctaaagaaatttattattaaaaaaaaaacacgtcaattaaacttttctaaacaacggcaaaaaag |
9071537 |
T |
|
| Q |
107 |
agcaatgtaaaggaagtgcatcaataaacaaaaacaccac |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9071536 |
agcaatgtaaaggaagtgcatcaataaacaaaaacaccac |
9071497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 18138762 - 18138826
Alignment:
| Q |
224 |
aaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc |
288 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
18138762 |
aaaaaaatgcaatgtcaattaaacttctctaaatagcggcaaaaagagcattgtaaacgaagtgc |
18138826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 18138775 - 18138838
Alignment:
| Q |
73 |
gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaa |
137 |
Q |
| |
|
||||||||||||| |||||| | ||||||||| ||||| |||||| ||||||||||||||||||| |
|
|
| T |
18138775 |
gtcaattaaacttctctaaatagcggcaaaaa-gagcattgtaaacgaagtgcatcaataaacaa |
18138838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 9071695 - 9071594
Alignment:
| Q |
101 |
aaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaag |
200 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||| || | ||| ||||||| | | || || ||||||||||| |||||||||| |||||||| |
|
|
| T |
9071695 |
aaaaagagcattgtaaacgaagtgcatcaataaacaataaaaatacagaaactaacaaacaacagtatcatatgaccttagtatgtgaatcgatctaaag |
9071596 |
T |
|
| Q |
201 |
aa |
202 |
Q |
| |
|
|| |
|
|
| T |
9071595 |
aa |
9071594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 9071735 - 9071671
Alignment:
| Q |
224 |
aaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgc |
288 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||| |||||||||| |||||||| |||||| |
|
|
| T |
9071735 |
aaaaaaatgcaatgtcaattaaacttcactaaatagcgtcaaaaagagcattgtaaacgaagtgc |
9071671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 301
Target Start/End: Complemental strand, 5337269 - 5336972
Alignment:
| Q |
9 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttnnnnnnn--cacgtcaattaaactttt-ctaaacaacggcaaaaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5337269 |
caacaatatcatatgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaaaacacgtcaattaaactttttctaaacaacggcaaaaaa |
5337170 |
T |
|
| Q |
106 |
-gagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcatatgaccttcatatgtgaatcaatctaaagaatt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||| || | |
|
|
| T |
5337169 |
agagcaatgtaaaggaagtgcatcaataaacaaaaaaactacagaaactaatggagagcattaacatatgacctttatatgtgaatcaatctaaataaat |
5337070 |
T |
|
| Q |
205 |
ttcctac-ttacaaaataacaaaaacatgcagggtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaacaaagtgcggtataagaaaat |
301 |
Q |
| |
|
||||||| ||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
5337069 |
ttcctactttaaaaaataataaaaacatgcaaggtcaattaaacttgtctaaatagcggcaaaaagagtgttgtaaacaaagtgaggtataagaaaat |
5336972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 5337355 - 5337205
Alignment:
| Q |
73 |
gtcaattaaacttttctaaacaacggcaaaaaagagcaatgtaaaggaagtgcatcaataaacaaaaacaccacataaactaatggagagcattagcata |
172 |
Q |
| |
|
||||||||||||| |||||| | ||| ||||| ||||| |||||| |||||||||||||||||| || | |||| ||||||| | | || || |||| |
|
|
| T |
5337355 |
gtcaattaaacttctctaaatagcgggaaaaa-gagcattgtaaattaagtgcatcaataaacaataaaaacacagaaactaacaaacaacaatatcata |
5337257 |
T |
|
| Q |
173 |
tgaccttcatatgtgaatcaatctaaagaattttcctacttacaaaataaca |
224 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||| |||||| |||| |||| |
|
|
| T |
5337256 |
tgaccttagtatgtgaatcgatctaaagaaatttattacttaaaaaaaaaca |
5337205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 280
Target Start/End: Complemental strand, 5337355 - 5337312
Alignment:
| Q |
237 |
gtcaattaaacttatctaaatagcggcaaaaagagcgttgtaaa |
280 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
5337355 |
gtcaattaaacttctctaaatagcgggaaaaagagcattgtaaa |
5337312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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