View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1111_high_87 (Length: 336)

Name: NF1111_high_87
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1111_high_87
NF1111_high_87
[»] chr3 (1 HSPs)
chr3 (29-108)||(34431726-34431805)
[»] chr4 (2 HSPs)
chr4 (253-302)||(16565288-16565337)
chr4 (104-153)||(16565441-16565492)
[»] chr6 (3 HSPs)
chr6 (104-157)||(17830899-17830954)
chr6 (253-283)||(16547220-16547250)
chr6 (104-153)||(16547358-16547409)
[»] scaffold0394 (2 HSPs)
scaffold0394 (253-284)||(6880-6911)
scaffold0394 (104-153)||(6732-6783)
[»] chr2 (4 HSPs)
chr2 (253-284)||(5917234-5917265)
chr2 (253-283)||(36311361-36311391)
chr2 (104-153)||(5917075-5917126)
chr2 (104-153)||(36311499-36311550)
[»] chr5 (2 HSPs)
chr5 (253-283)||(22481279-22481309)
chr5 (104-153)||(22481417-22481468)
[»] chr1 (2 HSPs)
chr1 (253-283)||(35570196-35570226)
chr1 (104-153)||(35570037-35570088)
[»] chr7 (3 HSPs)
chr7 (253-282)||(12963074-12963103)
chr7 (104-153)||(10372846-10372897)
chr7 (104-153)||(37638605-37638656)


Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 34431805 - 34431726
Alignment:
Q  29 ctttgttcatttttaagcctgtttttacatgtcattctatgtcaccattttctttattttcaccatctttgtcatgttca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34431805 ctttgttcatttttaagcctgtttttacatgtcattctatgtcaccattttctttattttcaccatctttgtcatgttca 34431726  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 302
Target Start/End: Complemental strand, 16565337 - 16565288
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagcaacagctagggctttgtca 302  Q
    ||||||||||||||||||||||||||||||||| ||  || |||||||||    
T  16565337 cttgaggaggatgcggaaagttaaggttagcaatagtaagagctttgtca 16565288  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 16565492 - 16565441
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  16565492 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 16565441  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 157
Target Start/End: Original strand, 17830899 - 17830954
Alignment:
Q  104 gttcacatctatatagacccata--ccctattggcgttggataaccagaatccacc 157  Q
    |||||||||||||| |||| |||  ||||||||| |||||||||||||||||||||    
T  17830899 gttcacatctatatggaccaatataccctattggtgttggataaccagaatccacc 17830954  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 16547250 - 16547220
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagc 283  Q
    |||||||||||||||||||||||||||||||    
T  16547250 cttgaggaggatgcggaaagttaaggttagc 16547220  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 16547409 - 16547358
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  16547409 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 16547358  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 284
Target Start/End: Original strand, 6880 - 6911
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagca 284  Q
    ||||||||||||||||||||||||||||||||    
T  6880 cttgaggaggatgcggaaagttaaggttagca 6911  T

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Target: scaffold0394; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 6732 - 6783
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  6732 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 6783  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 284
Target Start/End: Original strand, 5917234 - 5917265
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagca 284  Q
    ||||||||||||||||||||||||||||||||    
T  5917234 cttgaggaggatgcggaaagttaaggttagca 5917265  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 36311391 - 36311361
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagc 283  Q
    |||||||||||||||||||||||||||||||    
T  36311391 cttgaggaggatgcggaaagttaaggttagc 36311361  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 5917075 - 5917126
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  5917075 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 5917126  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 36311550 - 36311499
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  36311550 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 36311499  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Complemental strand, 22481309 - 22481279
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagc 283  Q
    |||||||||||||||||||||||||||||||    
T  22481309 cttgaggaggatgcggaaagttaaggttagc 22481279  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 22481468 - 22481417
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  22481468 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 22481417  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 35570196 - 35570226
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttagc 283  Q
    |||||||||||||||||||||||||||||||    
T  35570196 cttgaggaggatgcggaaagttaaggttagc 35570226  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 35570037 - 35570088
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  35570037 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 35570088  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 282
Target Start/End: Complemental strand, 12963103 - 12963074
Alignment:
Q  253 cttgaggaggatgcggaaagttaaggttag 282  Q
    ||||||||||||||||||||||||||||||    
T  12963103 cttgaggaggatgcggaaagttaaggttag 12963074  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 10372846 - 10372897
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  10372846 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 10372897  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 37638656 - 37638605
Alignment:
Q  104 gttcacatctatatagacccat--accctattggcgttggataaccagaatc 153  Q
    |||||||||||||| |||| ||  |||||||||| |||||||||||||||||    
T  37638656 gttcacatctatatggaccaatgtaccctattggtgttggataaccagaatc 37638605  T

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