View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_9 (Length: 542)
Name: NF1111_high_9
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 290 - 542
Target Start/End: Original strand, 26661833 - 26662085
Alignment:
| Q |
290 |
cttacatagcagattaaactagaagatgaagaccgaggtgagtgactgccacttccgtctctatttttcgtttgtgctaacatctaatctatgtcgttaa |
389 |
Q |
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| T |
26661833 |
cttacaaagcagattaaactagaagatgaagaccgaggtgagtgactgccacttccgtctctatttttcgtttgtgctaacatctaatctatgtcgttaa |
26661932 |
T |
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| Q |
390 |
atcttagacaagggtgcagagtgctgaaccccaaaaccactatagtgcttctcatgacaggtattttagagaatgcagttactttttctgttactttgag |
489 |
Q |
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| T |
26661933 |
atcttagacaagggtgcagagtgctgaaccccaaaaccactatagtgcttctcatgacaggtattttagagaatgcaattactttttctgttactttgag |
26662032 |
T |
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| Q |
490 |
aacatcaaatgaagttaactaattttcttaaaggatgtgagaacgttttatat |
542 |
Q |
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| T |
26662033 |
aacatcaaatgaagttaactaattttcttaaaggatgtgagaacgttttatat |
26662085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 120 - 226
Target Start/End: Original strand, 26661676 - 26661769
Alignment:
| Q |
120 |
tttcttgaattttttaaattgctatcaaagatggtggttatgactccatgataccgattgatgtgaaactaagatgaagtttcaagaaaaaagatctttg |
219 |
Q |
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| T |
26661676 |
tttcttgaattttttaaattgctatcaaagatggtggttatgactccatgataccg-------------taagatgaagtttcaagaaaaaagatctttg |
26661762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 453 - 530
Target Start/End: Complemental strand, 40270000 - 40269923
Alignment:
| Q |
453 |
ttttagagaatgcagttactttttctgttactttgagaacatcaaatgaagttaactaattttcttaaaggatgtgag |
530 |
Q |
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| T |
40270000 |
ttttagagaatacaactactttttctattactttgagaaaattaaatgaagttgactacttttcttaaagggtgtgag |
40269923 |
T |
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