View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_94 (Length: 331)
Name: NF1111_high_94
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_94 |
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Alignment Details
Target: chr6 (Bit Score: 275; Significance: 1e-154; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 28529665 - 28529348
Alignment:
| Q |
1 |
tctgtcattctccagtcgatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattt--acaacnnnnnnnngtagcaggagag |
98 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
28529665 |
tctgtcattctccagtcaatagcaatacaattaaagtcctgcacacaatgaatgggaaatggtgagtaaattataacaacaaaagaaagtagcaggagag |
28529566 |
T |
|
| Q |
99 |
tactggcattttcatattgaaatatttttcgattaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529565 |
tactggcattttcatattgaaatatttttcgattaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaa |
28529466 |
T |
|
| Q |
199 |
attgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagaga |
298 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28529465 |
attgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagaga |
28529366 |
T |
|
| Q |
299 |
aaaaatctctcccaaaac |
316 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
28529365 |
aaaaatctctcccaaaac |
28529348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 131 - 302
Target Start/End: Complemental strand, 28086927 - 28086756
Alignment:
| Q |
131 |
ttaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaattt |
230 |
Q |
| |
|
|||| ||||| |||||||||||||||| || |||||| | |||||| |||||||| ||||| ||||||||||| | || |||||| ||||||| || || |
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| T |
28086927 |
ttaattaaaatgaaaagaatcatacctcctccacatagagtaagaaaaaaaataacggatcaacaaaaattgcgaccaagcaaaatatggccaaaacctt |
28086828 |
T |
|
| Q |
231 |
gttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaaa |
302 |
Q |
| |
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|||||||||||| |||| ||| | |||||||| ||||||||||||| ||||||| ||||||||| ||||| |
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| T |
28086827 |
gttccattgttgtacaacttttgcatgagggttcataactccaggaatacatgaattgcagaaagaaaaaaa |
28086756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 131 - 301
Target Start/End: Complemental strand, 28056287 - 28056117
Alignment:
| Q |
131 |
ttaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaattt |
230 |
Q |
| |
|
|||||||||| ||||||||| | ||||| | |||||| | | |||| |||||||| ||||| |||||||||| | ||||||||| ||||||| || || |
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| T |
28056287 |
ttaaataaaatgaaaagaattaaaccttgttcacatagagtgagaagaaaaataacggatcaacaaaaattgtgaccatgcaaaatatggccaaaacctt |
28056188 |
T |
|
| Q |
231 |
gttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
301 |
Q |
| |
|
|||||||||| | || | ||| ||||||||||| ||||||||||||| |||||||||||||||||| |||| |
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|
| T |
28056187 |
gttccattgtagtacgactttcgtgtgagggttcataactccaggaatacatgaagagcagaaagaaaaaa |
28056117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 130 - 296
Target Start/End: Complemental strand, 27906915 - 27906749
Alignment:
| Q |
130 |
attaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatt |
229 |
Q |
| |
|
|||||||||||||||||||||||||| || | |||||| | |||||| |||||||| ||||| |||| |||||| | || |||||| ||| ||| || | |
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| T |
27906915 |
attaaataaaaggaaaagaatcatactttgttcacatagaataagaacaaaaataaaggatcaacaagaattgcgaccaagcaaaatatgtccaacaact |
27906816 |
T |
|
| Q |
230 |
tgttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaaga |
296 |
Q |
| |
|
||||||||||||| | || | | | ||| ||||| |||||||| |||| |||||||||||||||||| |
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|
| T |
27906815 |
tgttccattgttgtataattctcgcgtgtgggttcataactcctggaatacatgaagagcagaaaga |
27906749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 130 - 301
Target Start/End: Original strand, 27926906 - 27927078
Alignment:
| Q |
130 |
attaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatt |
229 |
Q |
| |
|
||||||||||| ||||||||| ||||||| | |||||| | |||||| |||||||||||||| | ||||||||| | || |||||| ||||||| || | |
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|
| T |
27926906 |
attaaataaaatgaaaagaattataccttgttcacatagagtaagaagaaaaataatggatcaataaaaattgcgaccaagcaaaatatggccaaaacct |
27927005 |
T |
|
| Q |
230 |
tgttccattgttgaacaagtttagtgtgagggtt-tataactccaggaacacatgaagagcagaaagagaaaa |
301 |
Q |
| |
|
||||||||||||| |||| ||| | ||||| || |||||| |||||| ||||||||||||||||| |||| |
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|
| T |
27927006 |
tgttccattgttgtacaactttcgcttgaggattccataacttcaggaatccatgaagagcagaaagaaaaaa |
27927078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 301
Target Start/End: Complemental strand, 28012254 - 28012085
Alignment:
| Q |
132 |
taaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttg |
231 |
Q |
| |
|
|||||||||||||||||| |||||||| | |||||| | | ||||||||||||| ||||||||||||||||| | | ||||| ||||||| ||| ||| |
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|
| T |
28012254 |
taaataaaaggaaaagaagcataccttgttcacatagaatgagaataaaaataagggatccacaaaaattgcaacaaagcaaattatggccaaaaacttg |
28012155 |
T |
|
| Q |
232 |
ttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
301 |
Q |
| |
|
|||||| || |||| |||| || ||||| |||||| ||||| ||||||||||||| |||| |||| |
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|
| T |
28012154 |
ttccataagtgtacaactttacagtcggggttcataactttaggaatacatgaagagcaggaagaaaaaa |
28012085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 301
Target Start/End: Complemental strand, 28026488 - 28026339
Alignment:
| Q |
152 |
ataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagttt |
251 |
Q |
| |
|
||||||| | |||||| | |||||| |||||||| ||||| ||| ||||||| | |||||||| ||||||| ||| |||||||||||||| |||| ||| |
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|
| T |
28026488 |
ataccttgttcacatagaataagaagaaaaataacggatcaacataaattgcgactatgcaaaatatggccaaaaacttgttccattgttgtacaacttt |
28026389 |
T |
|
| Q |
252 |
agtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
301 |
Q |
| |
|
| || ||||| ||||| ||||||| ||| ||||| |||||||| |||| |
|
|
| T |
28026388 |
cgcatgggggttcataacaccaggaatacacgaagaacagaaagaaaaaa |
28026339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 271
Target Start/End: Complemental strand, 27893043 - 27892944
Alignment:
| Q |
172 |
aagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgttccattgttgaacaagtttagtgtgagggtttataactc |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || |||| |||| || | |||||| |||||||| || ||||||||| | || || |||||||||| |
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|
| T |
27893043 |
aagaagaaaaataatggatccacaaaaattgccaccaagcaacaaattgcaaaaaatttattccattgatgtacaagtttattatgtggatttataactc |
27892944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 133 - 301
Target Start/End: Complemental strand, 27995974 - 27995806
Alignment:
| Q |
133 |
aaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaatttgt |
232 |
Q |
| |
|
|||| ||| ||||||||||||||||| | |||||| |||||| |||||||| ||||| | ||||||||| | |||| | || || | || | ||| |
|
|
| T |
27995974 |
aaatgaaaagaaaagaatcataccttgttcacatagtataagaagaaaaataacggatcaaaaaaaattgcgactgagcaagatatagcaaaaattgtgt |
27995875 |
T |
|
| Q |
233 |
tccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaagagaaaa |
301 |
Q |
| |
|
|||||||||| || | |||| ||||||||| ||||||| ||||| |||||||||||| ||||| |||| |
|
|
| T |
27995874 |
tccattgttgtacgactttacagtgagggttcataactctaggaatacatgaagagcaaaaagataaaa |
27995806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 131 - 296
Target Start/End: Complemental strand, 1435594 - 1435429
Alignment:
| Q |
131 |
ttaaataaaaggaaaagaatcataccttctgcacatatattaagaataaaaataatggatccacaaaaattgccagcatgcaaaaaatggccagaaattt |
230 |
Q |
| |
|
|||||||||| ||||||||||| | ||| |||||||| | |||||| |||||||| ||||| ||||||||||| |||| |||||| ||||||| ||| || |
|
|
| T |
1435594 |
ttaaataaaatgaaaagaatcaaaacttgtgcacataaagtaagaagaaaaataagggatcaacaaaaattgcgagcaggcaaaatatggccaaaaactt |
1435495 |
T |
|
| Q |
231 |
gttccattgttgaacaagtttagtgtgagggtttataactccaggaacacatgaagagcagaaaga |
296 |
Q |
| |
|
||||||||| || |||| ||| ||||||||||| || |||||||||| |||||||||||||||||| |
|
|
| T |
1435494 |
gttccattgctgtacaatttttgtgtgagggttcatcactccaggaatacatgaagagcagaaaga |
1435429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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