View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_95 (Length: 329)
Name: NF1111_high_95
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_95 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 4145352 - 4145053
Alignment:
| Q |
30 |
gttcccatattagacctttcaaattcaaatagactattcacatcatctttaatatccaagaaataagaattattttgatgcttgcaattttcaacatata |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4145352 |
gttcccatgttagacctttcaaattcaaatagactattcacatcatctttaatatccaagaaataataattattttgatgcttgcaattttcaacatata |
4145253 |
T |
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| Q |
130 |
gaccaggttttgaatgtgcacgatgtaggcacgcttcggcaaacagggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaag |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
4145252 |
gaccaggttttgaatgtgcacgatgtaggcacgcttcggcaaacagggagctgcgaatagtagtagcccaagatttgcaaacataccttgcagagttaag |
4145153 |
T |
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| Q |
230 |
cagacatttaacagggagaaaactaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactcttactactataggaattt |
329 |
Q |
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| T |
4145152 |
cagacatttaacagggagaaaactaaggatatcaaacaccaagtcttcagggattaacaactttgaaatcactttacaactcttaccactataggaattt |
4145053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 321
Target Start/End: Original strand, 2326977 - 2327232
Alignment:
| Q |
66 |
ttcacatcatctttaatatccaagaaataagaattattttgatgcttgcaattttcaacatatagaccaggttttgaatgtgcacgatgtaggcacgctt |
165 |
Q |
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| T |
2326977 |
ttcacataatctttaaattccaagaaataagaattgtccggttccatgcaattttcaacataaagaccaagtttagaatgtgcatggcgttcgtatgctt |
2327076 |
T |
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| Q |
166 |
cggcaaacagggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatcaaa |
265 |
Q |
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| T |
2327077 |
cagcaaaatgggagctgccaatagtagcagcccacagtttgtttacataccttgcagagttaagcaggcaattaagaggaacaaaagtaaagatatgaaa |
2327176 |
T |
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| Q |
266 |
caccaagtcttcagggattaacaactttgaaatcactttacaactcttactactat |
321 |
Q |
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| T |
2327177 |
cctcaagtcttcaagtagaagcaactttgaaatcattttacaactcttagtactat |
2327232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 317
Target Start/End: Complemental strand, 39571693 - 39571552
Alignment:
| Q |
176 |
ggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatcaaacaccaagtct |
275 |
Q |
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| T |
39571693 |
ggagctgcgaatagtagccgcccaagatttgcaaacatatcttgtagagttaattaggctattaagaggaaccaaactaaagatatcaaacaataaatct |
39571594 |
T |
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| Q |
276 |
tcagggattaacaactttgaaatcactttacaactcttacta |
317 |
Q |
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| T |
39571593 |
tcagggagcagcaactttgaaatcactttacaactcttacta |
39571552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 39571816 - 39571771
Alignment:
| Q |
53 |
ttcaaatagactattcacatcatctttaatatccaagaaataagaa |
98 |
Q |
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| T |
39571816 |
ttcaaattgcctattcatatcatctttaatatccaagaaataagaa |
39571771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 65 - 313
Target Start/End: Complemental strand, 9846518 - 9846270
Alignment:
| Q |
65 |
attcacatcatctttaatatccaagaaataagaattattttgatgct-tgcaattttcaacatatagaccaggttttgaatgtgcacgatgtaggcacgc |
163 |
Q |
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||||||||||||||||| ||||||||||||||| || | || || | ||| |||||||||||| ||||||||||| ||| ||||||| | |||| |
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| T |
9846518 |
attcacatcatctttaaattccaagaaataagaactactctg-tgttgtgcgattttcaacataaagaccaggtttagaacgtgcacggctttcgcacat |
9846420 |
T |
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| Q |
164 |
ttcggcaaacagggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatca |
263 |
Q |
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||| |||| ||||||||| |||||||| |||||||| ||| |||||||||||||||| |||| ||| || |||| | | | || |||||||||||| |
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| T |
9846419 |
ttcaacaaaaagggagctggcaatagtagcagcccaagctttacaaacataccttgcagaattaatcaggcagttaagatgaaccaacctaaggatatca |
9846320 |
T |
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| Q |
264 |
aacaccaagtcttcagggattaacaactttgaaatcactttacaactctt |
313 |
Q |
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| T |
9846319 |
aacaccaagtgttcaggaagcaacagcgttgaaatcacttcacaactctt |
9846270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 65 - 314
Target Start/End: Complemental strand, 9841439 - 9841190
Alignment:
| Q |
65 |
attcacatcatctttaatatccaagaaataagaattattttgatgct-tgcaattttcaacatatagaccaggttttgaatgtgcacgatgtaggcacgc |
163 |
Q |
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| T |
9841439 |
attcacatcatctttaaattccaagaaataagaactactt-gttgtggtgcaattttgaacatatagaccaggcttagaacgtggacggcgttcgtatgc |
9841341 |
T |
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| Q |
164 |
ttcggcaaacagggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatca |
263 |
Q |
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| T |
9841340 |
ttcagcaaaaggggagcttgcaatagtagcagcccaaggtttgcaaacatatcttgcagagttaaacaagcaggtaagaggaaccaaagtaaggacatga |
9841241 |
T |
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| Q |
264 |
aacaccaagtcttcagggattaacaactttgaaatcactttacaactctta |
314 |
Q |
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| T |
9841240 |
aacaacaagtcttcaagaagcaacaactttgaaatcactttacaactctta |
9841190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 9902281 - 9902143
Alignment:
| Q |
176 |
ggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcagacatttaacagggagaaaactaaggatatcaaacaccaagtct |
275 |
Q |
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||||||| |||| ||| ||||||||||||| ||||||||||||||||||| | |||||| | || ||| | ||| ||||||||| ||||| ||||||| |
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| T |
9902281 |
ggagctggcaataatagcagcccaaggtttgcaaacataccttgcagagttgatcagacaatcaagaggaaccaaagtaaggatataaaacatcaagtct |
9902182 |
T |
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| Q |
276 |
tcagggattaacaactttgaaatcactttacaactctta |
314 |
Q |
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| T |
9902181 |
tcaggaagcaacacctttgaaattacttcacaactctta |
9902143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 229
Target Start/End: Complemental strand, 7256194 - 7256125
Alignment:
| Q |
160 |
acgcttcggcaaacagggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaag |
229 |
Q |
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||||||| ||||| ||||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||| |
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| T |
7256194 |
acgcttcagcaaaatgggagctgccaattgtagcagcccaaggtttgcaaacatacctcgcagagttaag |
7256125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 232
Target Start/End: Complemental strand, 46445330 - 46445273
Alignment:
| Q |
175 |
gggagctgcgaatagtagtagcccaaggtttgtaaacataccttgcagagttaagcag |
232 |
Q |
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| T |
46445330 |
gggagctgtgaataacagtagcccaagatatgcaaacaaaccttgcagagttaagcag |
46445273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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