View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1111_high_96 (Length: 328)
Name: NF1111_high_96
Description: NF1111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1111_high_96 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5549123 - 5548892
Alignment:
| Q |
1 |
tctagaggtggagatatgttccactttgaacctacaccttcatgtgtgtaatatcttggtaatttgacacctccttctttgtcaattgctggtgaaacca |
100 |
Q |
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| T |
5549123 |
tctagaggtggagatatattccactttgaacctacgccttcatgtgtgtaatatcttggtaatttgacacctccttctttgtcaattgctggtgaaacca |
5549024 |
T |
|
| Q |
101 |
acctgaattctttgctagccatggatagcaaagtaaatatgcttattatttgtgcactttgttgcgtaattttgcaaatgctataattgattcatttgcg |
200 |
Q |
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| T |
5549023 |
acctgaattctttgctagccatggatagcaatgtaaatatgcttactatttgtgcactttgttgcgt-attttgcaaatgctataattgattaatttgcg |
5548925 |
T |
|
| Q |
201 |
gtgtgtttgtataagttcatgtctataaatgatga |
235 |
Q |
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|| ||||| |||||||||||||||||||||||| |
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| T |
5548924 |
ttgggtttg--taagttcatgtctataaatgatga |
5548892 |
T |
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